Locus 7791

Sequence ID X_DroMel_CAF1
Location 19,411,890 – 19,412,001
Length 111
Max. P 0.779129
window12783

overview

Window 3

Location 19,411,890 – 19,412,001
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 85.74
Mean single sequence MFE -27.11
Consensus MFE -21.93
Energy contribution -22.44
Covariance contribution 0.50
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.81
SVM decision value 0.55
SVM RNA-class probability 0.779129
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19411890 111 - 22224390
GACCACUUACACCCCAGCUGUCGUAAUCUGGCCAAAAAGCAGCUGACAAGUUGGUAACAAGCUGAGGAAAAUAGCCUGGCCAUAAAAGACGGUGCCAACAGUGAAUAUAUU
...((((.........((((((......(((((......(((((.((......))....)))))(((.......)))))))).....))))))......))))........ ( -28.26)
>DroSec_CAF1 11727 111 - 1
GACCACUUACAACCCAGCUGUCGUAAUCUGGCCAAAAAGCAGCUGACAAGUUGGUAACAAGCUGAGGAAAAUAGCCUGGCCAUAAAAGACGGUGCCAACAGUGAAUAUGUU
...((((.........((((((......(((((......(((((.((......))....)))))(((.......)))))))).....))))))......))))........ ( -28.26)
>DroEre_CAF1 11715 92 - 1
AAC------------AGCUGUCGUAAUCUGGCCAAAAAGCAGCUGACAAGUUGGUAACAAGUUGAGGAAAAUAGUCUGGCCAUAAAUGACAGGGCCAACA-------UAUU
...------------..(((((((....((((((........((..(((.(((....))).))).)).........))))))...)))))))........-------.... ( -23.53)
>DroYak_CAF1 11809 111 - 1
AACCACUUACUUCCCAGCUGUCGCAAUCUGGCCAAAAAGCAGCUGACAAGUUGGUAACAAGUUGAGGAAAAUAGCCUGGCCAUAAAAGACACGGCCAACAGUGAAUUUAUU
...((((...(((((((((((.((......))......))))))).(((.(((....))).))).)))).......(((((...........)))))..))))........ ( -28.40)
>consensus
AACCACUUACA_CCCAGCUGUCGUAAUCUGGCCAAAAAGCAGCUGACAAGUUGGUAACAAGCUGAGGAAAAUAGCCUGGCCAUAAAAGACAGGGCCAACAGUGAAUAUAUU
...((((.........((((((......(((((......(((((.((......))....)))))(((.......)))))))).....))))))......))))........ (-21.93 = -22.44 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:38 2006