Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,158,724 – 2,158,826 |
Length | 102 |
Max. P | 0.906637 |
Location | 2,158,724 – 2,158,826 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -29.27 |
Consensus MFE | -20.58 |
Energy contribution | -20.70 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.14 |
Structure conservation index | 0.70 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2158724 102 + 22224390 AAACGGAGACGAAGACGAAGACGUCUGGUUUU-UU---UUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAAG-------- (((..(((((..(((((....))))).)))))-..---)))....((((((((((((((.((((.....))))))))...((((......))))))))))))))..-------- ( -29.00) >DroSec_CAF1 39099 98 + 1 AAACGGAGACG------AAGACGUCUGGUUUU-UUUUGUUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGGGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAA--------- ....(((((((------((((.(......).)-))))))))))..((((((((((......((((((((((((....)))))...)))))))..)))))))))).--------- ( -27.30) >DroSim_CAF1 36777 95 + 1 AAACGGAGACG------AAGACGUCUGGUUUUUUUUUGUUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUC-----CGAUUCGAUCCGCAAAAGCAAG-------- (((((((((..------(((((.....))))))))))))))....((((((((((..((.((((.....))))))((((-----......))))))))))))))..-------- ( -24.50) >DroEre_CAF1 40196 99 + 1 AAACGGAGACG------GAGACGUCUCGUUU---------UUUAAUGUUUUUGUGUUGCAUUCGAAUUGUGAGGCGAUCCGAUUCGAUUCGAUCCGCAAAAGCAAAGGCAAAAC (((((.(((((------....))))))))))---------.....(((((((((.((((..((((((((...((....))....))))))))...))))..))))))))).... ( -36.30) >consensus AAACGGAGACG______AAGACGUCUGGUUUU_UU___UUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAAG________ ......(((((..........)))))...................((((((((((..((.((((.....))))))((((.((......)))))))))))))))).......... (-20.58 = -20.70 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:39 2006