Locus 7786

Sequence ID X_DroMel_CAF1
Location 19,390,933 – 19,391,033
Length 100
Max. P 0.957302
window12775

overview

Window 5

Location 19,390,933 – 19,391,033
Length 100
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 77.77
Mean single sequence MFE -42.54
Consensus MFE -26.08
Energy contribution -25.44
Covariance contribution -0.64
Combinations/Pair 1.30
Mean z-score -2.20
Structure conservation index 0.61
SVM decision value 1.48
SVM RNA-class probability 0.957302
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19390933 100 + 22224390
GGGCGUUCGCCUCCUUGCUGUGGGUGUGGUUGCGU------GCGUAGACGUCAGCGCAAUGCCUUUGUUUGGCGGCAUGCGGAUGACAUUCACGUCCGUAUCCGCA
((((...((((..(.....)..))))..(((((((------(((....)))..))))))))))).......((((.(((((((((.......))))))))))))). ( -42.20)
>DroSec_CAF1 24060 98 + 1
GGGCGUUCGCCUCCGUGCUGUGGGU--GGGUGCAG------GCGUGGACGUCAGCACAAUGCCUUUGUUUGGCGGCAUGUGGAUGACGUUCAUGUCCACAUCCGCA
((((....))))(((.....)))((--(((((..(------((((((((((((.((((.((((.......))))...))))..)))))))))))))..))))))). ( -47.60)
>DroEre_CAF1 22991 98 + 1
GGGCGCUCCUUUCCUGGCUGUGAGU--GGGUGCGU------GCGUUUAUGUCAGCGCAAUGCUUUUGUUUGGCGGCAUGCGGAUGGCAUACACGUCCACAUCCGCA
...(((.((......))..))).((--(((((.(.------.(((.(((((((.((((.((((.((....)).))))))))..))))))).)))..).))))))). ( -38.60)
>DroYak_CAF1 22228 98 + 1
GGGCGCUCUCCUCCUUGCUGUGAGC--GGGUGCGU------GCGUUGACGUCAGCGCAAUGCCUUUGUUUGUCGGCAUGCGGAUGGCGUACACGUCCACAUCCGCA
..((((.(((((((.....).))).--))).))))------((((((....)))))).(((((..........)))))((((((((((....)))...))))))). ( -41.10)
>DroAna_CAF1 35166 92 + 1
-------GAC-----UUCUGUGUGU--GUGUGCGUGUGUUGGCGUUGGCGUCAGCGCAAUGCCAUUGUUUGCCGGCAUGCGGCUGGCGUGCACGUCUACAUCCGCA
-------...-----....(((..(--(((.(((((..(((((((((((....)).))))))))......((((((.....)))))))..))))).))))..))). ( -43.20)
>consensus
GGGCGCUCGCCUCCUUGCUGUGAGU__GGGUGCGU______GCGUUGACGUCAGCGCAAUGCCUUUGUUUGGCGGCAUGCGGAUGGCGUACACGUCCACAUCCGCA
..............................((((.......((((.(((((((.((((.((((..........))))))))..))))))).)))).......)))) (-26.08 = -25.44 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:31 2006