| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,380,314 – 19,380,414 |
| Length | 100 |
| Max. P | 0.657549 |
| Location | 19,380,314 – 19,380,414 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 85.66 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -21.23 |
| Energy contribution | -21.35 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19380314 100 - 22224390 AUACGUUGUCCGAUUGCGAUUUCUGUUCGGAUUUUGGCGAGAUUCUGAGAUUCGGAUUCGGAUUCAGUUUCCCAUUCGGACUGGUCGCAGGACGCCCAUA .......((((...(((((((...(((((((...(((.((((..(((((.((((....))))))))))))))))))))))).)))))))))))....... ( -33.60) >DroSec_CAF1 13450 93 - 1 AUACGUUGUCCGAUUGCGAUUCCUGUUCGGAUUCUGGC-------UGAGAUUCGGAUUCGGAUUCAGUUUCCCAUUCGGACUGGUCGCAGGACGCCCAUA .......((((...(((((..((.((((((((...(((-------((((.((((....)))))))))))....)))))))).)))))))))))....... ( -32.30) >DroEre_CAF1 13261 86 - 1 AUUUGUUCUCCGAUGGCGAUUCCUAUUCGGAUUCUGGC-------UGAGAUUCGGAUUCGGAUUCAGUUUCCCAUUCGGACUGGUCGCAGGAC------- ........(((....((((..((..(((((((...(((-------((((.((((....)))))))))))....)))))))..)))))).))).------- ( -26.30) >DroYak_CAF1 13072 86 - 1 AUUCGUUCUCCGGUUGCGUUUCCUAUUCGGAUUCUGGC-------UGAGAUUCGGAUUCGGAUUCAGUUUCCCAUUCGGACUGGUCGCAGGAU------- ........(((...((((...((..(((((((...(((-------((((.((((....)))))))))))....)))))))..)).))))))).------- ( -25.50) >consensus AUACGUUCUCCGAUUGCGAUUCCUAUUCGGAUUCUGGC_______UGAGAUUCGGAUUCGGAUUCAGUUUCCCAUUCGGACUGGUCGCAGGAC_______ .......((((....((((((((.((((((((.((.(........).))))))))))..)))..((((((.......))))))))))).))))....... (-21.23 = -21.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:29 2006