Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,364,750 – 19,364,870 |
Length | 120 |
Max. P | 0.703306 |
Location | 19,364,750 – 19,364,870 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.04 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -23.31 |
Energy contribution | -22.87 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.42 |
Structure conservation index | 0.97 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19364750 120 - 22224390 ACCAAAAAAAAAAUAGAAAACAUCAGUAAUGUUAAUUAUAUUUAUCGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAUUCAAGUCGAAUCCGAAUCCGAGAUGUACAAACUUC ...................(((((.....(((((((.(((..(((...)))..))).)))))))..((((((((...(((((......)))))..)))))...))))))))......... ( -23.20) >DroSec_CAF1 7636 117 - 1 AUGG---AAAACAUGGAAAACAAGAGCAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAACUUC (((.---....)))...........(((.(((((((.(((..(((...)))..))).))))))).(((((((((...(((((......)))))..)))))...))))...)))....... ( -24.40) >DroSim_CAF1 7523 117 - 1 AUGG---AAAACAUGGAAAACAAGAGUAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAACUUC ....---...(((((((......((((..(((((((.(((..(((...)))..))).))))))))))).(((((...(((((......)))))..))))).)))...))))......... ( -24.70) >consensus AUGG___AAAACAUGGAAAACAAGAGUAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAACUUC .........................(((.(((((((.(((..(((...)))..))).))))))).(((((((((...(((((......)))))..)))))...))))...)))....... (-23.31 = -22.87 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:26 2006