Locus 7780

Sequence ID X_DroMel_CAF1
Location 19,362,982 – 19,363,073
Length 91
Max. P 0.990294
window12766

overview

Window 6

Location 19,362,982 – 19,363,073
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 70.90
Mean single sequence MFE -42.93
Consensus MFE -25.75
Energy contribution -26.87
Covariance contribution 1.12
Combinations/Pair 1.37
Mean z-score -2.20
Structure conservation index 0.60
SVM decision value 2.21
SVM RNA-class probability 0.990294
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19362982 91 - 22224390
UUUCCUGUCUGCUGUCGCGCUCGCGGCGGAUGUAGAAUCAGCCGCGCUGGGCGCAGAUGCUGUUGCGGCGCCA------GCCGCGGCUGCGUCGACA
.............((((((((((((((.(((.....))).))))))...))))).(((((.((((((((....------)))))))).)))))))). ( -50.70)
>DroSec_CAF1 5950 91 - 1
CUUCCUGUCUGCUGUCGCGCUCGUGGCGGAUGUAGAAUCAGCUGCGCUGGGCGCAGAUGCGGUUGCUGCGCCA------GCCGCGGCUGCGUCGACA
.............((((((((((..((.(((.....))).))..))...))))).(((((((((((.((....------)).)))))))))))))). ( -43.80)
>DroSim_CAF1 5849 91 - 1
CUUCCUGUCUGCUGUCGCGCUCGUGGCGGAUGUAGAAUCAGCCGCGCUGGGCGCAGAUGCGGUUGCUCCGCCA------GCCGCGGCUGCGUCGCCA
.......(((((.(((.(((.....)))))))))))..((((...))))(((((((.((((((((......))------)))))).))))))).... ( -40.30)
>DroEre_CAF1 5989 91 - 1
UUUUCUGUCUGCCGUCGCACUCGUGGCGGAUGCGGUAUCAGCCGCACUGGGAGCAGAUGCGGUUGCUGAGGCA------GCUGCAGCUGCAUCGAUA
..((((((((((((.((....))))))))))(((((....)))))...))))((((.(((((((((....)))------)))))).))))....... ( -43.40)
>DroYak_CAF1 6138 97 - 1
UUUUCUGUCAGCCGUCGCACUCGUGGCGGAUGCGGCAUCAGCCGCACUGGGCGCAGAUGCUGUUGCUGUGGCAACUGCAGCUGCAGCUGCGUCGACA
......(((..(((((((....))))))).((((((....))))))...(((((((.(((.(((((...(....).))))).))).)))))))))). ( -51.20)
>DroPer_CAF1 8193 73 - 1
CUUGCUGACUGAGCCUGAAUUGGCUCUGGCCGCCGAGUCGCCUGCACUGGCUGCUGGUGC------------------------GGAUCCAUCCUCG
..........(((((......)))))((((((((.(((.(((......))).))).).))------------------------))..)))...... ( -28.20)
>consensus
CUUCCUGUCUGCUGUCGCACUCGUGGCGGAUGCAGAAUCAGCCGCACUGGGCGCAGAUGCGGUUGCUGCGCCA______GCCGCGGCUGCGUCGACA
.....((((.......(((((((((((.(((.....))).)))))...)))))).(((((.(((((.((..........)).))))).))))))))) (-25.75 = -26.87 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:23 2006