Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,158,540 – 2,158,648 |
Length | 108 |
Max. P | 0.664246 |
Location | 2,158,540 – 2,158,648 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -39.05 |
Consensus MFE | -27.68 |
Energy contribution | -28.06 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.17 |
Mean z-score | -2.90 |
Structure conservation index | 0.71 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2158540 108 - 22224390 ---UUCUCUGCGGCAUUUU-------AGGGCGGACAAUUUCAUCAAUGUCUUUGCCGCCACUG--UAAAUGCUCGAGGGACAGAUACACAUGCCCACUUGGCCACAGCAGCGGCCAAGAC ---.......(((((((((-------(((((((.(((...((....))...)))))))).)))--.)))))).)).(((.((........))))).(((((((.(....).))))))).. ( -40.90) >DroSec_CAF1 38918 108 - 1 ---UUCUCUGCGGCAUUUU-------AGGGCGGACAAUUUCAUCAAUGUCUUUGCCGCCACUG--UAAAUGCUCGAGGGACAGAUACACAUGCCCACUUGGCCACAGCAGCGGCCAAGAC ---.......(((((((((-------(((((((.(((...((....))...)))))))).)))--.)))))).)).(((.((........))))).(((((((.(....).))))))).. ( -40.90) >DroSim_CAF1 36597 108 - 1 ---UUCUCUGCGGCAUUUU-------AGGGCGGACAAUUUCAUCAAUGUCUUUGCCGCCACUG--UAAAUGCUCGAGGGACAGAUACACAUGCCCACUUGGCCACAGCAGCGGCCAAGAC ---.......(((((((((-------(((((((.(((...((....))...)))))))).)))--.)))))).)).(((.((........))))).(((((((.(....).))))))).. ( -40.90) >DroEre_CAF1 40021 108 - 1 ---UCCUCUGCGGCGUUUU-------AGGGCGGACAAUUUCAUCAAUGUCUUUGCCGCCACUG--UAAAUGCUCGAGGGACAGAUACACAUGCCCACUUGGCCACAGCAGCGGCCAAGCC ---.......(((((((((-------(((((((.(((...((....))...)))))))).)))--.)))))).)).(((.((........))))).(((((((.(....).))))))).. ( -39.80) >DroYak_CAF1 41545 110 - 1 ---UUCUCUGCGGCGUUUU-------AGGGCGGACAAUUUCAUCAAUGUCUUUGCCGCCACUGUGUAAAUGCUCGAGGGACAGAUACACAUGCCCGCUUGGCCACAGCAGCGGCCAAGCU ---......(.(((((...-------(((((((.(((...((....))...)))))))).))(((((..((((....)).))..)))))))))))((((((((.(....).)))))))). ( -42.70) >DroAna_CAF1 45967 106 - 1 UUUUUUUUUGUGGUAUCUUCUCCAGACGGCCAGACAAUUUCAUCAAUGUCUUUGCCGCCACCG--UAAAUGCUA------AAGAUACAAAUG------UAUCUACAGCGGCGGUUGAGAU ..................((((..(.((((.(((((..........)))))..)))).)((((--(...((((.------.((((((....)------)))))..))))))))).)))). ( -29.10) >consensus ___UUCUCUGCGGCAUUUU_______AGGGCGGACAAUUUCAUCAAUGUCUUUGCCGCCACUG__UAAAUGCUCGAGGGACAGAUACACAUGCCCACUUGGCCACAGCAGCGGCCAAGAC ...........(((((((..........(((((.(((...((....))...)))))))).......)))))))...(((.((........))))).(((((((.(....).))))))).. (-27.68 = -28.06 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:38 2006