Locus 7779

Sequence ID X_DroMel_CAF1
Location 19,362,809 – 19,362,924
Length 115
Max. P 0.512172
window12765

overview

Window 5

Location 19,362,809 – 19,362,924
Length 115
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.86
Mean single sequence MFE -35.05
Consensus MFE -24.53
Energy contribution -24.20
Covariance contribution -0.33
Combinations/Pair 1.24
Mean z-score -0.99
Structure conservation index 0.70
SVM decision value -0.04
SVM RNA-class probability 0.512172
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19362809 115 - 22224390
UUACGAUCUGGUCGAGAUUGUAGCGGCGCCGAUUGUUUAAGUAAAAGGUGCGCACGUGCGCCUCCGUUUUGGUGGCCACCACCUUGGCAAUCGUCUGCAAGCAUAAGAA--GCGAGA
.((((((((.....))))))))((((...((((((((........(((((((....))))))).......(((((...)))))..)))))))).))))..((.......--)).... ( -37.80)
>DroVir_CAF1 8633 105 - 1
UGACAAUCUGAUCUAGAUUGUAGCGUCGACGAUUGCUCACAUAGAAGGUGCGCACAUGCGCCUCCGUCUUGGUGCCCACGACUUUGGCAAUCAUCUGCAAGA-----------CA-A
..((((((((...))))))))...((.((.(((((((.........((.((((....))))..))(((.(((...))).)))...))))))).)).))....-----------..-. ( -32.20)
>DroEre_CAF1 5817 114 - 1
UUACGAUCUGGUCGAGAUUGUAUCGACGUCUAUUGUUUAAGUAGAAGGUGCGCACGUGCCCCUCCGUUUUGGUGGUCACCAACUUGGCAAUCAUCUGCAAUCGUCAAAA--GCGA-A
.((((((((.....))))))))..(((.((((((.....)))))).(((..(((.(((.....(((..(((((....)))))..)))....))).))).))))))....--....-. ( -30.50)
>DroYak_CAF1 5964 116 - 1
UGACGAUCUGGUCGAGAUUGUAGCGGCGCCGAUUGUUCAAGUAGAAGGUGCGCACAUGCGCCUCCGUUUUGGUGGUCACCAGCUUGGCAAUCAUCUGCAAUCAUCAAAAGAGCAG-A
......((((.((((((((((((.(....)((((((.(((((....((.((((....))))..))....((((....)))))))))))))))..)))))))).))....)).)))-) ( -39.50)
>DroMoj_CAF1 8162 115 - 1
UAACGAUCUCGUCUAGAUUAUAGCGUCGUCGAUUGUUUAAGUAGUAGGUGCGCACAUGCGCCUCCGUCUUGGUGCCAACCACCUUGGCGAUCAUCUGCAUGGAGGAAGU-CCCCA-A
...((((..((.(((.....)))))..))))............((((((((((....))))...((((..((((.....))))..))))...)))))).(((.((....-)))))-. ( -36.30)
>DroAna_CAF1 5095 108 - 1
UCACGAUCUGAUCGAGAUUGUGGCGACGACGAUUGUUCAAGUAGAAAGUGCGCACGUGCGCUUCUGUCUUGGUAGCUACCAACUUGGCAAUCAUCUACGAGGAAGAG---------A
(((((((((.....)))))))))((..((.((((((.((((((((.((.((((....))))..)).)))((((....))))))))))))))).))..))........---------. ( -34.00)
>consensus
UGACGAUCUGGUCGAGAUUGUAGCGACGACGAUUGUUCAAGUAGAAGGUGCGCACAUGCGCCUCCGUCUUGGUGGCCACCACCUUGGCAAUCAUCUGCAAGCAUCAAAA__GCCA_A
..(((((((.....))))))).........((((((.((((..(.(((((((....))))))).)....((((....)))).))))))))))......................... (-24.53 = -24.20 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:22 2006