Locus 7778

Sequence ID X_DroMel_CAF1
Location 19,356,033 – 19,356,139
Length 106
Max. P 0.867783
window12764

overview

Window 4

Location 19,356,033 – 19,356,139
Length 106
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 81.60
Mean single sequence MFE -26.23
Consensus MFE -18.80
Energy contribution -19.63
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -2.30
Structure conservation index 0.72
SVM decision value 0.86
SVM RNA-class probability 0.867783
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19356033 106 - 22224390
CUC---------UCAGC-ACUUUUUCUAGAAUAUACGUCAGAA-AACUGAGCGAAUGCUCAAA-UUAAUUUAAACUGUGGCUGUAGCAGCCACGGUUGCAAGGGAUACACAAACUAUC
(((---------(..((-...((((((.((.......))))))-)).(((((....)))))..-........(((((((((((...))))))))))))).)))).............. ( -29.00)
>DroGri_CAF1 13688 109 - 1
GUUUAAUAAUUAACAACAACU--UUGUAUCGUAUAUUGAACAAAAUCUAUGCAAGAGCCGAAA-UUAAUUUAAACUGUGGCUGUAACACGCAAGGUUGAAAAGGAAA------UUAUC
.....((((((..(..(((((--((((...(((((..((......))))))).(.(((((...-((......))...))))).).....)))))))))....)..))------)))). ( -18.10)
>DroSec_CAF1 2807 106 - 1
CUC---------UCAAC-ACUGUUUCUAGAAUAUACGGCAGAA-AACUGAGCGAAUGCUCAAA-UUAAUUUAAACUGUGGCUGUAGCAGCCACGGUUGCAAAGGAUACACAAACUAUC
...---------.....-..(((.(((................-...(((((....)))))..-........(((((((((((...))))))))))).....))).)))......... ( -25.80)
>DroSim_CAF1 2830 107 - 1
CUC---------UCAGC-ACUGUUUCUAGAAUAUACGGCAGAAAAACUGAGCGAAUGCUCAAA-UUAAUUUAAACUGUGGCUGUAGCAGCCACGGUUGCAAAGGAUACACAAACUAUC
.((---------(..((-.(((((............)))))......(((((....)))))..-........(((((((((((...)))))))))))))..))).............. ( -27.20)
>DroEre_CAF1 2915 107 - 1
CUC---------UCAGA-ACUUUUACGAAAAUAUACGGCAGAA-AACUGAGCAAAUGCUCAAAGUUAAUUUAAACUGUGGCUGUAGCAGCCACGGUUGCAAGGGAUACACAAGCUAUC
.((---------((...-.......((........))((....-...(((((....)))))...........(((((((((((...)))))))))))))..))))............. ( -28.60)
>DroYak_CAF1 2845 107 - 1
CUC---------UUAAC-ACUUUUACGAAAAUAUACGGCAGAA-AACUGAGCAAAUGCUCAAAGUUAAUUUAAACUGUGGCUGUAGCAGCCACGGUUGCAAGGGAUACACAAACUAUC
(((---------((...-.......((........))((....-...(((((....)))))...........(((((((((((...)))))))))))))))))).............. ( -28.70)
>consensus
CUC_________UCAAC_ACUUUUUCUAGAAUAUACGGCAGAA_AACUGAGCAAAUGCUCAAA_UUAAUUUAAACUGUGGCUGUAGCAGCCACGGUUGCAAAGGAUACACAAACUAUC
...............................................(((((....)))))...........(((((((((((...)))))))))))..................... (-18.80 = -19.63 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:21 2006