Locus 7777

Sequence ID X_DroMel_CAF1
Location 19,349,998 – 19,350,118
Length 120
Max. P 0.701894
window12763

overview

Window 3

Location 19,349,998 – 19,350,118
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.94
Mean single sequence MFE -54.97
Consensus MFE -40.29
Energy contribution -41.02
Covariance contribution 0.73
Combinations/Pair 1.28
Mean z-score -2.28
Structure conservation index 0.73
SVM decision value 0.35
SVM RNA-class probability 0.701894
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19349998 120 - 22224390
ACCACCUGGGCCACCGCGUCUUCGCCCAGAAAGUCAAUGUCCGCAAAGACGGCGGACAGCGGAUGGCCGUCGGCAAGACGCGGCGGCUCCAGCAGUGUCUCCCGCGGCACCGGCACCAGG
....((((((((.(((((((((.(((...........(((((((.......)))))))((((....)))).)))))))))))).)))....((.(((((......)))))..)).))))) ( -61.10)
>DroSec_CAF1 9479 120 - 1
ACCACCUGGGCCACCGCGUCUUCGCCCAGAAAGUCAAUGUCCGCAAAGACGGCGGACAGCGGAUGGCCGUCGGCAAGGCGCGGCGGCUCCAACAGUUUCUCCCGCGGCACCGGCACCAGG
....((((((((((((((.((((.....).))).)..(((((((.......))))))))))).)))))(((((...(.(((((.((((.....))))....))))).).)))))..)))) ( -54.60)
>DroEre_CAF1 9096 120 - 1
ACCACCUGGGCCACUGCCUCUCCGCCCAGAAAGUCAAUGUCCGCAAAGACGGCGGACAGCGGAUGUCCGUCGGCUAGGCGCGGCGGCUCCAGCAGUGCCUCCCGCGGCACCGGCACCAGG
....((((((((..((((.....(((.....((((..(((((((.......)))))))((((....)))).)))).)))((((.(((.(.....).)))..))))))))..))).))))) ( -56.70)
>DroWil_CAF1 10118 120 - 1
AUCACUUGAGCCACUGCAUCACCGCCCAGAAAAUCAAUAUCAGCAAAUACUGCCGACAAUGGGUGACCAUCGGCCAGACGUGGUGGUUCAGUCAGAGCCUCGCUAGGCACUGGCACCAAA
......((((((((..(.((...((.................)).......(((((...(((....))))))))..)).)..))))))))(((((.((((....)))).)))))...... ( -44.23)
>DroYak_CAF1 8303 120 - 1
ACUACCUGGGCCACCGCCUCUCCGCCCAGAAAGUCAAUGUCCGCAAAUACGGCGGACAGUGGAUGGCCGUCUGCCAGGCGCGGCGGCUCAAGCAGUGCCUCCCGCGGCACCGGCACCAGG
....((((((((.(((((....((((((((..((((.(((((((.......))))))).....))))..))))...)))).)))))........(((((......))))).))).))))) ( -57.80)
>DroAna_CAF1 14306 120 - 1
ACCACUUGGGCCACCGCUUCGCCGCCCAGGAAGUCGAUGUCCGCGAACACGGCCGAUAAUGGGUGGCCGUCUGCCAGGCGCGGCGGCUCCAGGAGCGCCUCCCGAGGCACUGGCACCAGA
....((((((((.((((...((((((((....((((..(.(((......))))))))..)))))))).(((.....))))))).))).)))))...((((....)))).(((....))). ( -55.40)
>consensus
ACCACCUGGGCCACCGCCUCUCCGCCCAGAAAGUCAAUGUCCGCAAAGACGGCGGACAGCGGAUGGCCGUCGGCCAGGCGCGGCGGCUCCAGCAGUGCCUCCCGCGGCACCGGCACCAGG
....((((((((.........(((((...........(((((((.......)))))))(((..((((.....))))..))))))))........(((((......))))).))).))))) (-40.29 = -41.02 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:20 2006