Locus 7774

Sequence ID X_DroMel_CAF1
Location 19,337,443 – 19,337,549
Length 106
Max. P 0.991383
window12756

overview

Window 6

Location 19,337,443 – 19,337,549
Length 106
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 84.16
Mean single sequence MFE -41.25
Consensus MFE -32.69
Energy contribution -33.63
Covariance contribution 0.94
Combinations/Pair 1.12
Mean z-score -2.81
Structure conservation index 0.79
SVM decision value 2.26
SVM RNA-class probability 0.991383
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19337443 106 - 22224390
AUCGAUUCGAUCUGCUCUGAAGCCAUCAGAGAGCCGCUUCCCAAACUGGACCACAUGGCCUGGCCAGCU----------CAAGGUCGAGAUUGGCGAUAAACAGAUCCGAUUGGGU
.((((((.((((((((((((.....)))))).......((((((.((.((((...((((...))))...----------...)))).)).)))).))....)))))).)))))).. ( -37.60)
>DroSec_CAF1 10141 105 - 1
AUCGAUUCGAUCUGCUCUGAAGCCAUCAGAGAGCCGCUUCCCAAGCUGGACCACAUGACCAGGCCAGCU----------CAAGGUCGAGAGUGGCGA-AAACAGAUCCGAUUGGGU
.((((((.((((((((((((.....)))))).(((((((((..((((((.((.........))))))))----------...))....)))))))..-...)))))).)))))).. ( -42.70)
>DroEre_CAF1 9840 103 - 1
ACCGAUCCGAUCUGCUCUGAAGCCAUCAGAGAGCC------------GGACCACAUGGCUAGGCCAGGCCAAGCCAAGCCAAGGUCGAGAGUGGCGA-AAACAGAUGCGAUUGGGU
.(((((((.(((((((((((.....)))))).(((------------(((((...(((((.(((........))).))))).)))).....))))..-...)))))).)))))).. ( -42.10)
>DroYak_CAF1 9908 105 - 1
AUCGAUCCGAUCUGCUCUGAAGCCAUCGGAGAGCCGCUUCCCAAACUGGACCACAUGGCCAGGCCAGUC----------CAAGGUCGAGAGUGGCGA-AAACAGAUCCGAUUGGGU
.((((((.((((((((((((.....)))))).((((((..(....((((.((....))))))(((....----------...))).)..))))))..-...)))))).)))))).. ( -42.60)
>consensus
AUCGAUCCGAUCUGCUCUGAAGCCAUCAGAGAGCCGCUUCCCAAACUGGACCACAUGGCCAGGCCAGCC__________CAAGGUCGAGAGUGGCGA_AAACAGAUCCGAUUGGGU
.((((((.((((((((((((.....)))))).(((((((........((.((....)))).((((.................))))..)))))))......)))))).)))))).. (-32.69 = -33.63 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:14 2006