Locus 7773

Sequence ID X_DroMel_CAF1
Location 19,335,820 – 19,335,924
Length 104
Max. P 0.738286
window12755

overview

Window 5

Location 19,335,820 – 19,335,924
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 72.39
Mean single sequence MFE -21.50
Consensus MFE -11.90
Energy contribution -11.47
Covariance contribution -0.43
Combinations/Pair 1.30
Mean z-score -1.78
Structure conservation index 0.55
SVM decision value 0.44
SVM RNA-class probability 0.738286
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19335820 104 - 22224390
UGUAUAUGUACAUAGUAGUUCCUUGUUGAGGAACAGAGGAUGUAAAAUUCGUAAUUUGUUCAUGUUUUUCGACUAUCAAAUAGAUAUAAGUCUGAGUAUAUCAA
.....(((((((((((.(((((((...)))))))((((.(((..((((.....))))...))).))))...)))))....(((((....))))).))))))... ( -19.40)
>DroSec_CAF1 9160 89 - 1
---------------UAGUUCCUUGUUGAGGAACGGGGGAUGUAAAAUUCGUCAUUUGUUCAUGUUCUAUAUCUAUCAAAUAGAUAUAAGUCUGAGAACAUCAA
---------------..(((((((...)))))))((.((((.....)))).))...(((((.....((((((((((...)))))))).)).....))))).... ( -22.00)
>DroYak_CAF1 8820 89 - 1
---------------UAGUUCCCUGUUUGGGAACGGGGAAUCUAAGAUUCGUCAUUAGUUCAUAUUUUAUGACUGUAGAAUAGAUAAAAUGCUAAGAACGUCAA
---------------((((((((((((....))))))))).))).((..(((..(((((((.((((((((....))))))))))......)))))..))))).. ( -23.10)
>consensus
_______________UAGUUCCUUGUUGAGGAACGGGGGAUGUAAAAUUCGUCAUUUGUUCAUGUUUUAUGACUAUCAAAUAGAUAUAAGUCUGAGAACAUCAA
.................((((((.....))))))((.((((.....)))).))....((((.((.....)).........(((((....))))).))))..... (-11.90 = -11.47 +  -0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:13 2006