Locus 7772

Sequence ID X_DroMel_CAF1
Location 19,335,361 – 19,335,468
Length 107
Max. P 0.539788
window12754

overview

Window 4

Location 19,335,361 – 19,335,468
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.32
Mean single sequence MFE -38.30
Consensus MFE -15.72
Energy contribution -16.24
Covariance contribution 0.52
Combinations/Pair 1.20
Mean z-score -2.22
Structure conservation index 0.41
SVM decision value 0.01
SVM RNA-class probability 0.539788
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19335361 107 + 22224390
CCAUUAUCAGUCUUAUCAGGCCCUGUCCGGCC----GGACUUUCAUGCCGCUGA-------AAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG--UUCCGAUAGGGACCACCGAC
.((((.(((((.......((((......))))----((.(......))))))))-------.))))........(((....))).......(((((((--((((....))))))))))). ( -39.70)
>DroSec_CAF1 8776 102 + 1
CCAUUAUCAGUGUUAUCAGGCCCUGUCCGGCC----GGACUUUCAUGCCGCUGA-------CAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG--UUCCGAUAGGG-----CGAC
.........((.(((((.((((......))))----(((.......((((((((-------.((((.((((..........)))).)))).)))))))--))))))))).)-----)... ( -30.91)
>DroEre_CAF1 8436 102 + 1
CCAUUAUCAGCCUUAUCAGGCCCUGUCCGGCC----GGACUUUCAUGUCGCUGA-------AAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG--UUCCGAUAGGG-----CGAC
.........((((((((.((((......))))----((((......)(((((((-------(((((.((((..........)))).))))))))))))--.))))))))))-----)... ( -35.20)
>DroYak_CAF1 8428 102 + 1
CCAUUAUCAGUCUUAUCAGGCCCUGUCCGGCC----GGACUUUCAUGCCGCUGA-------CAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG--UUCCGAUAGGG-----CGAC
.........((((((((.((((......))))----(((.......((((((((-------.((((.((((..........)))).)))).)))))))--)))))))))))-----)... ( -34.11)
>DroAna_CAF1 11696 110 + 1
CGGCCG--UGUCUUAUCAGGGCCUGCCCGGCCACCCGACCAUUCCUGUCGACGGCGACGAUAAUUGCGGUUGUUGCUGUUG-GCGUUAUUUUCGGUGGCUUUCGGCUCGGG-----CU--
.((((.--((......)).)))).(((((((((((.((..((..(.(((((((((((((((.......)))))))))))))-)))..))..))))))))........))))-----).-- ( -51.60)
>consensus
CCAUUAUCAGUCUUAUCAGGCCCUGUCCGGCC____GGACUUUCAUGCCGCUGA_______AAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG__UUCCGAUAGGG_____CGAC
..........(((((((.((((......))))...............(((((((........((((....))))(((....))).......)))))))......)))))))......... (-15.72 = -16.24 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:12 2006