Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,334,915 – 19,335,032 |
Length | 117 |
Max. P | 0.726942 |
Location | 19,334,915 – 19,335,032 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.64 |
Mean single sequence MFE | -38.10 |
Consensus MFE | -28.92 |
Energy contribution | -28.18 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.15 |
Mean z-score | -1.72 |
Structure conservation index | 0.76 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19334915 117 + 22224390 ACUCAAUGC-GGCUGAGUCAGAGGCAGAGGCUAGAUAUCGAGUGGCAA-CAGUGUUUGUUUCUUUUCGCCAGUGAGGUGGAAAGUUUUGCA-UUUGCCGCUUGGCAGACCCAAUUUAGCA .(((..(((-..(((...)))..))))))(((((((...(((((((((-..((((......(((((((((.....)))))))))....)))-))))))))))((.....)).))))))). ( -41.40) >DroSec_CAF1 8320 115 + 1 ACUCAAUGC-GACUGAGUCAGCGGCAGGGGCUAGAAAUCGAGUGGCAA-CAGUG---GUUUCUUUUCGCCGGUGAGGUGGAAAGUUUUGCAGUUUGCCGCUUGGCAGACCCAAUUUAGCA (((((....-...)))))..((.....(((((.(...(((((((((((-(.(..---(...(((((((((.....)))))))))..)..).).)))))))))))))).)))......)). ( -40.30) >DroEre_CAF1 8030 109 + 1 ACUCAAUGC-GGCUGAGUCAG------AGCCUAGAAAUCGAGUGGCAAAGAGUG---CUUUCUUUUCGCCAGUGAGGUGGAAAGUUUUGCA-UUUGCCGUUUGGCGGAAUCAAUUUAGCA ......(((-((((.......------))))......(((((((((((...(((---(...(((((((((.....)))))))))....)))-)))))))))))).............))) ( -33.80) >DroYak_CAF1 8003 109 + 1 GCUCAAUGCUGGCUGAGUCAG------AGGCUAGAAAUCGAGUGGCAA-CAGUG---GUUUCUUUUCGUCAGUGAGGUGGAAAGUUUUGCA-GUUGCCGUUCGACGGACCCAAUUUAGCA (((.(((.((((((.......------.))))))...(((((((((((-(.(..---(...((((((..(.....)..))))))..)..).-))))))))))))........))).))). ( -36.90) >consensus ACUCAAUGC_GGCUGAGUCAG______AGGCUAGAAAUCGAGUGGCAA_CAGUG___GUUUCUUUUCGCCAGUGAGGUGGAAAGUUUUGCA_UUUGCCGCUUGGCAGACCCAAUUUAGCA (((((........)))))...........((((((..(((((((((((...(((.......(((((((((.....)))))))))...)))...))))))))))).........)))))). (-28.92 = -28.18 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:11 2006