Locus 7770

Sequence ID X_DroMel_CAF1
Location 19,333,082 – 19,333,182
Length 100
Max. P 0.848421
window12752

overview

Window 2

Location 19,333,082 – 19,333,182
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 86.39
Mean single sequence MFE -26.98
Consensus MFE -19.77
Energy contribution -20.40
Covariance contribution 0.63
Combinations/Pair 1.11
Mean z-score -2.05
Structure conservation index 0.73
SVM decision value 0.78
SVM RNA-class probability 0.848421
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19333082 100 + 22224390
UGUGGGGAUUACACGCAGCAUUGCCAUUUACGUCGUUUGUUUAUGCGGCGCUUGGCUCCCUUCUCAUUUUGGCGUCAUUAUCGCCAUCCCCACUCGUCAU
.(((((((..............((((....((((((........))))))..)))).............(((((.......))))))))))))....... ( -34.20)
>DroSec_CAF1 6538 96 + 1
U--GGGGAUUGCACGCAGCAUUGCCAUUUACGUCGUUUGUUUAUGCGGCGCUUGGCUCCCCUCUCAUCUUGGCGUCAUUAUCGCCAUC--CACUCAUCAU
.--(((((.(((.....)))..((((....((((((........))))))..)))))))))........(((((.......)))))..--.......... ( -31.40)
>DroEre_CAF1 6368 86 + 1
U--GGGGAUUACACACAGCAUUGCCAUUUACGUCGUUUGUUUAUGC----------UCCCCUCUCAUCUUGGCGUCAUUAUCGCCGUC--CACUGGUCAU
.--(((((.........((...))(((..(((.....)))..))).----------))))).........((((.......))))(.(--(...)).).. ( -16.40)
>DroYak_CAF1 6384 96 + 1
U--GGGGAUUACACGCAGCAUUGCCAUUUACGUCGUUUGUUUACGCGGCGCUUCGUUCCCCGCUCAUCUUGGCGUCAUUAUCGCCAUC--CACUACUCGU
.--(((((....(((.(((.((((.....(((.....)))....)))).))).))))))))........(((((.......)))))..--.......... ( -25.90)
>consensus
U__GGGGAUUACACGCAGCAUUGCCAUUUACGUCGUUUGUUUAUGCGGCGCUUGGCUCCCCUCUCAUCUUGGCGUCAUUAUCGCCAUC__CACUCGUCAU
...(((((.....(((.((((...((...........))...)))).)))......)))))........(((((.......))))).............. (-19.77 = -20.40 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:10 2006