Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,157,875 – 2,157,993 |
Length | 118 |
Max. P | 0.985645 |
Location | 2,157,875 – 2,157,972 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -13.36 |
Energy contribution | -12.87 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.22 |
Mean z-score | -1.72 |
Structure conservation index | 0.61 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2157875 97 + 22224390 --G-UUAUCAUUCUU--AUUUUCGUAUUUUGUUUUAUUGGCACUCGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACG------CG --(-((.(((.....--.....................(((((......))))).....((((((.((((((((....))))))))))))))))).))).------.. ( -19.90) >DroVir_CAF1 49483 96 + 1 GAGUUG---UUUUUG--GUUUUCAU-UAUUUUUUUAUUGCCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGAAGACG------CG ......---......--((((((((-(...........(((((....))).))........((((.((((((((....))))))))))))))))))))).------.. ( -22.80) >DroWil_CAF1 38551 91 + 1 ----GUGUG--------UUUUUUUUUUUGGGUUUUAUUGCCACUUGCGUGUGCUGCUAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGAAGACAA-----CG ----((.((--------(((((................(((((....))).))......((((((.((((((((....)))))))))))))).))))))))-----). ( -20.20) >DroMoj_CAF1 50421 96 + 1 GAGUUG---UUUUUG--GUUUUCAU-UAUUUUUUUAUUGCCAUUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGGAGACG------CG .....(---(...((--((......-............))))...))((((.((.(((((.((((.((((((((....))))))))))))))))))))))------). ( -24.97) >DroAna_CAF1 45142 105 + 1 --A-UCAUCACUCUCCAUUUUUCGUAUUUUGUUUUAUUGGCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGAUGAUGAAGACGACGCGACG --.-.................((((...(((((((((..((......((((((((.....))))))))((((((....))))))))..))))....))))).)))).. ( -20.30) >DroPer_CAF1 51518 101 + 1 UGGUUUUUCUUCUUU--AUUUUCGUAUCUUGUUUUAUUAGCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACGA-----CG .......((.(((((--(((...(((.((((..((((((((....))((((((((.....))))))))......)))))).)))).))).)))))))).))-----.. ( -24.00) >consensus __G_UU_UCUUUUUG__AUUUUCGUAUUUUGUUUUAUUGCCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGAAGACG______CG ..................((((((................(((......))).......((((((.((((((((....)))))))))))))))))))).......... (-13.36 = -12.87 + -0.50)
Location | 2,157,875 – 2,157,972 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -17.65 |
Consensus MFE | -9.39 |
Energy contribution | -9.42 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.07 |
Mean z-score | -2.35 |
Structure conservation index | 0.53 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2157875 97 - 22224390 CG------CGUCUUCAUCAGCAACUUAAUUAUUAAAUUAAAUGCGCUAAAUGGCAGCACACGCGAGUGCCAAUAAAACAAAAUACGAAAAU--AAGAAUGAUAA-C-- ..------.((((((....(((..((((((....)))))).)))......(((((((....))...)))))....................--..))).)))..-.-- ( -14.00) >DroVir_CAF1 49483 96 - 1 CG------CGUCUUCAUCAGCGACUUAAUUAUUAAAUUAAAUGCGCUAAAUGGCAGCACACGCAAGUGGCAAUAAAAAAAUA-AUGAAAAC--CAAAAA---CAACUC .(------.((.(((((.((((..((((((....))))))...))))........((.(((....)))))............-))))).))--).....---...... ( -19.00) >DroWil_CAF1 38551 91 - 1 CG-----UUGUCUUCAUCAGCGACUUAAUUAUUAAAUUAAAUGCGCUAAAUAGCAGCACACGCAAGUGGCAAUAAAACCCAAAAAAAAAAA--------CACAC---- .(-----(((.((.....((((..((((((....))))))...))))....)))))).(((....))).......................--------.....---- ( -17.00) >DroMoj_CAF1 50421 96 - 1 CG------CGUCUCCAUCAGCGACUUAAUUAUUAAAUUAAAUGCGCUAAAUGGCAGCACACGCAAAUGGCAAUAAAAAAAUA-AUGAAAAC--CAAAAA---CAACUC .(------(((((((((.((((..((((((....))))))...))))..)))).))...))))...................-........--......---...... ( -15.70) >DroAna_CAF1 45142 105 - 1 CGUCGCGUCGUCUUCAUCAUCAACUUAAUUAUUAAAUUAAAUGCGCUAAAUGGCAGCACACGCAAGUGCCAAUAAAACAAAAUACGAAAAAUGGAGAGUGAUGA-U-- ((((((....(((((((..((...((((((....)))))).((((((....))).)))(((....))).................))...))))))))))))).-.-- ( -22.30) >DroPer_CAF1 51518 101 - 1 CG-----UCGUCUUCAUCAGCAACUUAAUUAUUAAAUUAAAUGCGCUAAAUGGCAGCACACGCAAGUGCUAAUAAAACAAGAUACGAAAAU--AAAGAAGAAAAACCA .(-----(..(((((....(((..((((((....)))))).)))(((....)))(((((......))))).....................--...)))))...)).. ( -17.90) >consensus CG______CGUCUUCAUCAGCAACUUAAUUAUUAAAUUAAAUGCGCUAAAUGGCAGCACACGCAAGUGCCAAUAAAACAAAAUACGAAAAA__AAAAAAGA_AA_C__ ............................(((((........((((((....))).)))(((....)))..)))))................................. ( -9.39 = -9.42 + 0.03)
Location | 2,157,903 – 2,157,993 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 76.46 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -19.06 |
Energy contribution | -18.53 |
Covariance contribution | -0.53 |
Combinations/Pair | 1.16 |
Mean z-score | -2.40 |
Structure conservation index | 0.70 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2157903 90 + 22224390 UUAUUGGCACUCGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACG-CGCGUU----CUCUUUUGUCUG---CUGCG------------ .....((((..(((((((.((..((((.((((.((((((((....)))))))))))))))).)))))-))))..----..........))---))...------------ ( -24.14) >DroVir_CAF1 49510 107 + 1 UUAUUGCCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGAAGACG-CGCGCGCGCACUCUUUA--ACGCCAAUGCGCAUAUACAUACA ............(((((((((..((((.((((.((((((((....)))))))))))))))).)).))-)))))(((((.......--.......)))))........... ( -32.64) >DroEre_CAF1 39400 88 + 1 UUAUUGGCAUUCGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACG-CGCGUU----CUCUUUUGUCUGUCU----------------- .....((((..(((((((.((..((((.((((.((((((((....)))))))))))))))).)))))-))))..----......)))).....----------------- ( -24.50) >DroWil_CAF1 38572 93 + 1 UUAUUGCCACUUGCGUGUGCUGCUAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGAAGACAACGCGCU----GCUUUUCG-GUGUUAAUACG------------ .(((((.((((.(((((((.((((..((((((.((((((((....))))))))))))))...)).)).))))).----)).....)-))).)))))..------------ ( -26.40) >DroMoj_CAF1 50448 99 + 1 UUAUUGCCAUUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGGAGACG-CGCGCGCG--CUCUUUA--ACGCCA----GCAUACAC--ACA ...........((.((((((((.(..((((((.((((((((....))))))))))))))((((((.(-((....))--)))))))--..).))----)))))).)--).. ( -34.20) >DroPer_CAF1 51549 91 + 1 UUAUUAGCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACGACGCGGA----CUCUUACGGCUA---CUGCU------------ (((((((((...((((((((((.....))))))))((((((....))))))))))))))))).......((((.----............---)))).------------ ( -21.12) >consensus UUAUUGCCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGAAGACG_CGCGCU____CUCUUUAG_CUG_CA_UGCG____________ ............(((((((((..((((.((((.((((((((....)))))))))))))))).)).)).)))))..................................... (-19.06 = -18.53 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:37 2006