Locus 7768

Sequence ID X_DroMel_CAF1
Location 19,328,435 – 19,328,525
Length 90
Max. P 0.587191
window12749

overview

Window 9

Location 19,328,435 – 19,328,525
Length 90
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 88.35
Mean single sequence MFE -28.96
Consensus MFE -20.56
Energy contribution -20.68
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.587191
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19328435 90 - 22224390
CGCCUGCCUGAUCAUGGCCUUCACCGUUCUCUUUUGGAGCUGAGCUCCUGCA-------UCCCGCAUCCCCUCCAGGA---GCCGAAUGGCACCAUAGAU
.(((.(((.......))).......((((.(((((((((..((((.......-------....)).))..))))))))---)..)))))))......... ( -24.00)
>DroSec_CAF1 1819 97 - 1
CGCCUGCCUGAUCAUGGCCUUCGCCGUUCUCUUCUGGAGCUGAGCUCCUGCAUACCGCAUCCCGCAUCACCUCCAGGA---GCCGAAUGGCACCAUAGAU
.....(((.......)))....(((((((.(((((((((.(((((...(((.....)))....)).))).))))))))---)..)))))))......... ( -36.20)
>DroSim_CAF1 3191 97 - 1
CGCCUGCCUGAUCAUGGCCUUCACCGUUCUCUUCUGGAGCUGAGCUCCUGCAUACCGCAUCCCGCAUCACCUCCAGGA---GCCGAACGGCACCAUAGAU
.(((.(((.......))).......((((.(((((((((.(((((...(((.....)))....)).))).))))))))---)..)))))))......... ( -34.50)
>DroEre_CAF1 1794 90 - 1
CGCCUGCCUGAUCAUGGCCUUCACCGUUCUUUUCUGGAGCUGAACUCCUGCU-------GCCCGCAUCACCUAUAGGA---GCUGAAUGGCAACAUAGAU
.(((.(((.......))).((((..((((((....((((.....))))(((.-------....)))........))))---)))))).)))......... ( -20.60)
>DroYak_CAF1 1903 93 - 1
CGCCUGCCUGAUCAUGGCCUUCACCGUUCUCUUCUGGAGCUGAGCUCAUGCA-------UCCCUCAUCACCUCCAGGAGGCGCUGAAUGGCACCAUAGAU
.(((.(((.......))).((((.(((...(((((((((.(((((....)).-------.......))).)))))))))))).)))).)))......... ( -29.50)
>consensus
CGCCUGCCUGAUCAUGGCCUUCACCGUUCUCUUCUGGAGCUGAGCUCCUGCA_______UCCCGCAUCACCUCCAGGA___GCCGAAUGGCACCAUAGAU
.(((.(((.......))).......((((..((((((((.(((.....(((............)))))).))))))))......)))))))......... (-20.56 = -20.68 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:07 2006