Locus 7767

Sequence ID X_DroMel_CAF1
Location 19,321,269 – 19,321,371
Length 102
Max. P 0.876721
window12748

overview

Window 8

Location 19,321,269 – 19,321,371
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 80.67
Mean single sequence MFE -27.52
Consensus MFE -18.96
Energy contribution -18.92
Covariance contribution -0.04
Combinations/Pair 1.32
Mean z-score -2.00
Structure conservation index 0.69
SVM decision value 0.90
SVM RNA-class probability 0.876721
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19321269 102 - 22224390
ACAAACAAACCGCAGCCUGCGCCAAAUAAUUGGCGCAUAAAUCGGUCUUCAUCACGUCAACAGGGCGGUAGUAUUUUUGUUGCUCCGCCCACAAAAACUCCU
........((((.....((((((((....)))))))).....))))................((((((.((((.......))))))))))............ ( -33.90)
>DroSec_CAF1 1257 102 - 1
ACAACCAAACCGCAGUCUUCGCCAAAUAAUUGGCGCCAAAAUCGGUCAUCAUCACGUCAACAGGGCGGUAGUUUUAUGGUUGCUUCGCUCACCAAAGCUCCU
.((((((.((((.......((((((....)))))).......))))........((((.....)))).........))))))....(((......))).... ( -25.04)
>DroSim_CAF1 1244 102 - 1
ACAACCAAACCGCAGUCUUCGCCAAAUAAUUGGCGCCAAAAUCGGUCAUCAUCACGUCAACAGGGCGGUAGUUUUAUGGUUGCUCCGCUCACAAAAGCUCCU
.((((((.((((.......((((((....)))))).......))))........((((.....)))).........))))))....(((......))).... ( -25.04)
>DroEre_CAF1 1206 96 - 1
ACAACCAAACCGCAGCCUGCGCCAGAUAAUUGGCGCAACAAUCGCU------CACGUCAACAAGGCGGCAGCAGCUUUGUUGCUCCACACACAAAAGAUACC
...........(((((.((((((((....))))))))......(((------..((((.....))))..)))......)))))................... ( -26.90)
>DroYak_CAF1 1207 96 - 1
ACAGCCAAGCCGCAGCCCACGCCAGAUAAUUGGCGCCAGAAUCGGU------CCCGUCAACAAGGCGGAAGUUCCUUUGUUGUUCCGCCCACAGAAGCUGCC
...........(((((...((((((....))))))........(((------.....(((((((((....)...))))))))....))).......))))). ( -26.70)
>consensus
ACAACCAAACCGCAGCCUGCGCCAAAUAAUUGGCGCCAAAAUCGGUC_UCAUCACGUCAACAGGGCGGUAGUUUUUUUGUUGCUCCGCCCACAAAAGCUCCU
........((((.......((((((....)))))).......))))................((((((.(((.........)))))))))............ (-18.96 = -18.92 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:06 2006