| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,313,040 – 19,313,153 |
| Length | 113 |
| Max. P | 0.859132 |
| Location | 19,313,040 – 19,313,153 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.65 |
| Mean single sequence MFE | -45.42 |
| Consensus MFE | -25.75 |
| Energy contribution | -26.70 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19313040 113 - 22224390 CCGCCGCAGGACU-CAGAUCAAUCUGAUCGAGUUCAGUUUCUUGGAUCACAAGGCGGAGCUCGUGGGCCUGCUGCAGGCCAAGAGCCGCCAGGUAGGCAGGAGUCUGGUGGAGA (((((...(((((-(.((((.....))))))))))((.((((((..(.((..((((..((((...((((((...))))))..))))))))..)))..)))))).)))))))... ( -51.60) >DroVir_CAF1 5522 106 - 1 -----AUGCGCCAGCCAAUCAAUUUGGUGAACUUCAGUUUUUUGGAGCACAGGGCGACGCUCAGCGAUCAGCUGCUCACCAAGAGCCGGCAU-CAGCA--CAGUCUUGUGGAGA -----...((((((.........))))))..((((((....))))))(((((((((((((...))).)).(((((((.....))).))))..-.....--..)))))))).... ( -32.60) >DroGri_CAF1 6596 106 - 1 -----GCAGGACAGUCGCUCAAUUUGGUUGAGUUUAGUUUUCUGGAUCACAAGGCGACGCUGCGCGGUCUGCUGCUAACGAAAGGCCGCCAC-CAGCU--GAGCCUCGUCGAGA -----.(((((.....(((((((...)))))))......)))))..((((.((((...((((.(((((((....(....)..)))))))...-)))).--..)))).)).)).. ( -35.90) >DroSec_CAF1 3068 113 - 1 CCGCCGCAGGACU-CAGAUCAGCCUGAUCGAGUUUAGUUUCUUGGAUAACAAGGCGGAGCUCGUGGGCCUGCUGCAGGCCAAGAGCCGCCAGGCAGGCAGGAGUCUGGUGGAGA (((((((..((((-(.((((.....)))))))))..))...(((.....)))))))).((((...((((((...))))))..))))((((((((........)))))))).... ( -52.10) >DroSim_CAF1 4322 113 - 1 CCGCCGCAGGACU-CAGAUCAGUCUGAUCGAGUUCAGUUUCUUGGAUCACAAGGCGGAGCUCGUAGGCCUGCUGCAGGCCAAGAGCCGCCAGGCAGGCAGGAGUCUGGUGGAGA (((((...(((((-(.((((.....))))))))))......(((.....)))))))).((((...((((((...))))))..))))((((((((........)))))))).... ( -52.20) >DroYak_CAF1 4607 113 - 1 CGGCCACAGGACA-CAACUCAACCUGAUCGAGUUCAGUUUCUUGGACCGCAAGGCGGAGCUGUCGGGCCUGCUGCAGGCCAAGAGCCGCCAGGCAGGCAGGAGUCUGGUGGAGA ...((((.((((.-...(((..(((...((.((((((....))))))))..)))..)))(((((.((((((...))))))....(((....))).)))))..)))).))))... ( -48.10) >consensus CCGCCGCAGGACA_CAGAUCAAUCUGAUCGAGUUCAGUUUCUUGGAUCACAAGGCGGAGCUCGUGGGCCUGCUGCAGGCCAAGAGCCGCCAGGCAGGCAGGAGUCUGGUGGAGA ...((((.((((....((((.....))))..((((((....)))))).....((((..((((...((((((...))))))..))))))))............)))).))))... (-25.75 = -26.70 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:02 2006