| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,311,184 – 19,311,291 |
| Length | 107 |
| Max. P | 0.714041 |
| Location | 19,311,184 – 19,311,291 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 84.03 |
| Mean single sequence MFE | -39.48 |
| Consensus MFE | -31.49 |
| Energy contribution | -32.72 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19311184 107 - 22224390 AAUC-UCUAAUUGCAGUGCGCCCUCAGCGUGGAGGAAAAGAUCACACCGCUGGGCAGAUCGCUGGCCAACUUGCCCGUAGAGCUGUCCAUCGGCAAGAUGCUGCUUAU ....-.......(((((....((((......)))).....(((...(((.(((((((.((((.(((......))).)).)).))))))).)))...)))))))).... ( -35.70) >DroVir_CAF1 3633 108 - 1 AAUCCUCUUUUUGCAGUGCGCGCUCAGCGUUGAUGAGAAGAUAACUCCGCUGGGCAGCUCGCUGGCCAAUUUGCCCGUGGAGCUGCCCAUUGGCAAGAUGCUGCUGAU ............(((((((((.....))))................(((.((((((((((((.(((......))).)).)))))))))).)))......))))).... ( -41.30) >DroGri_CAF1 4075 105 - 1 A-UC--CAUGAUGCAGUGCGCACUCAGCGUGGAUGAGAAGAUCACGCCGCUGGGCAGCUCGCUGGCCAAUCUGCCCGUAGAGCUGCCCAUUGGCAAGAUGCUGCUGAU (-((--((((.((.(((....))))).))))))).((.(((((..((((.((((((((((((.(((......))).)).)))))))))).))))..))).)).))... ( -48.00) >DroEre_CAF1 3180 107 - 1 AAUC-UCUAAUGGCAGUGCGCCCUCAGCGUGGAUGAGAAGUUAACACCAUUGGGCAGCUCGCUGGCCAACUUGCCGGUGGAGCUGUCCAUCGGCAAGAUGUUGCUUAU ....-......(((.....)))((((.......))))((((.((((...((((.(((....))).))))((((((((((((....)))))))))))).)))))))).. ( -41.60) >DroYak_CAF1 2743 107 - 1 AAUC-UCUAUUCGCAGAGCGCUCUCAGCGUGGAGGAGAAGAUCACACCAUUGGGCAGCUCGCUGGCCAACUUGCCCGUGGAGCUAUCCAUCGGCAAGAUGCUGCUCAU ...(-((((..(((.(((....))).))))))))(((.((.........((((.(((....))).))))((((((.(((((....))))).))))))...)).))).. ( -40.40) >DroAna_CAF1 3839 104 - 1 UA----UUUAUUUCAGUGCGCUCUCAGCGUGGAGGAGAAGAUCACUCCGCUGGGCAGCUCGCUUGCCAACCUGCCCGUAGAACUCUCCAUUGGCAAAAUGCUACUCAU ..----........((((.(((((((((..((((((.....)).)))))))))).))).)))).((.....((((.((.((....)).)).))))....))....... ( -29.90) >consensus AAUC_UCUAAUUGCAGUGCGCCCUCAGCGUGGAGGAGAAGAUCACACCGCUGGGCAGCUCGCUGGCCAACUUGCCCGUAGAGCUGUCCAUCGGCAAGAUGCUGCUCAU ............(((((((((.....))))................(((.((((((((((((.(((......))).)).)))))))))).)))......))))).... (-31.49 = -32.72 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:01 2006