| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,310,712 – 19,310,809 |
| Length | 97 |
| Max. P | 0.946189 |
| Location | 19,310,712 – 19,310,809 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 66.11 |
| Mean single sequence MFE | -39.13 |
| Consensus MFE | -18.17 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19310712 97 + 22224390 CUGCUCCUCCU--CGUCCUC------CGCUACCCGUCCAGCGCU-CUGCUUGAGCAACUUGCGCUGACGGGGUUGCUCAAAUCGCUGGCGGCGCUUCAUGGCUUUC ..((.((.((.--((.....------.((..((((((.(((((.-.(((....)))....)))))))))))...))......))..)).)).))............ ( -34.80) >DroVir_CAF1 3164 97 + 1 AUCCUCCUCCUGCUGCGUAUCCGCAGCGCC---------GUGCUGGCGCUUGAGCAGCUUGCGCUGGCGCGGCUGCUCCAGGCGCUGGCGCCGCUUGAGCGCCUUC ......(((..((((((....))))))((.---------((((..((((((((((((((.(((....)))))))))).)))))))..)))).))..)))....... ( -55.90) >DroGri_CAF1 3615 88 + 1 AUCCUCAUCCAGCUGG---U------CGUG---------AUGCUGCUGUUUGAGCAGCUUGCGCUGACGCGGCUGUUCGAAGCGUUGGCGACGCUUCAGCCCCCUC .........(((((((---(------((((---------..((((((.....))))))...))).))).))))))...((((((((...))))))))......... ( -36.80) >DroYak_CAF1 2271 97 + 1 CCGCUCCUCCU--CGUCCUC------CGCUGCCCUUCCAGCGCU-GUGCUUAAGCAACUUGCGCUGACGGGGUUGCUCAAAUCGCUGGCGGCGUUUCAUGGCUUUC ..(((......--((.((.(------(((.(((((..((((((.-.(((....)))....))))))..))))).))..........)).))))......))).... ( -32.80) >DroAna_CAF1 3357 89 + 1 --GAC---CCU--GGUCCUC------AGUGUCC----CGGUGCUGGUGCUUGAGAAGCUUUCGCUGGCGCGGCUGCUCGAAUCGCUGGCGACGUUUGAGGGCCUUC --...---...--(((((((------((.....----((.(((..(((.(((((.(((...(((....)))))).)))))..)))..))).)).)))))))))... ( -36.20) >DroPer_CAF1 3662 91 + 1 UGGCUCCUCGUACUGCCCAC------CGCU---------GUGCUGGUGUUUUAGUAGCUUGGGGUGUCGGGGCUGCUCAAACCGCUGGCGCCGUUUGAGAGCCUUC .(((.(((((..((((.(((------(((.---------..)).)))).....))))..))))).)))((((((.(((((((.((....)).))))))))))))). ( -38.30) >consensus AUGCUCCUCCU__UGUCCUC______CGCU_________GUGCUGGUGCUUGAGCAGCUUGCGCUGACGCGGCUGCUCAAAUCGCUGGCGACGCUUCAGGGCCUUC ........................................((((((((..(((((((((...........)))))))))...))))))))................ (-18.17 = -18.28 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:00 2006