Locus 7761

Sequence ID X_DroMel_CAF1
Location 19,309,387 – 19,309,507
Length 120
Max. P 0.941972
window12740

overview

Window 0

Location 19,309,387 – 19,309,507
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.47
Mean single sequence MFE -42.95
Consensus MFE -37.96
Energy contribution -38.52
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.16
Structure conservation index 0.88
SVM decision value 1.32
SVM RNA-class probability 0.941972
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19309387 120 + 22224390
UUUCUACCGUCAGUUGCAGCAGCUGGAGCAAAACAAGCGCCAGCUGGAGGGCUUUUGCAAGAUGGAGGCGCAGCUGAACCAGAAGGUCGUGGAGGAAAAGAAGCGAAUCGCUGAAUUGCG
(((((.(((((((((((..(((((((.((.......)).)))))))....((((((.......))))))))))))))(((....)))..))).)))))....((((.((...)).)))). ( -43.40)
>DroSim_CAF1 1240 120 + 1
UUUCUACCGCCAGUUGCAGCAGCUGGAGCAGAACAAGCGCCAGCUGGAGGGCUUUUGCAAGAUGGAGGCGCAGCUGAACCAGAAGGUCGAGGAGGAAAAGAAGCGAAUCGCCGAACUACG
(((((.((..(((((((..(((((((.((.......)).)))))))....((((((.......))))))))))))).(((....)))...)).)))))....(((...)))......... ( -40.20)
>DroEre_CAF1 1388 120 + 1
UUUCUACCGCCAGUUGCAACAGCUGGAGCAGAACAAACGCCAGCUGGAGGGCUUUUGCAAGAUGGAGGCGCAGCUGAACCGGAAGGUCGUAGAGGAAAAGAAGAGGAUCGCCGAACUUCG
(((((((...(((((((..(((((((.(.........).)))))))....((((((.......))))))))))))).(((....))).)))))))....((((.((....))...)))). ( -43.30)
>DroYak_CAF1 1146 120 + 1
UUUCUACCGCCAGUUGCAGCAGCUGGAGCAGAAUAAGCGCCAGCUGGAGGGCUUUUGCAAGAUGGAGGCGCAGCUGAACCAGAAGGUCGUGGAGGAAAAGAAGCGGAUUGCCGAAAUACG
(((((.(((((((((((..(((((((.((.......)).)))))))....((((((.......))))))))))))).(((....))).)))).))))).....(((....)))....... ( -44.90)
>consensus
UUUCUACCGCCAGUUGCAGCAGCUGGAGCAGAACAAGCGCCAGCUGGAGGGCUUUUGCAAGAUGGAGGCGCAGCUGAACCAGAAGGUCGUGGAGGAAAAGAAGCGAAUCGCCGAACUACG
(((((.(((((((((((..(((((((.((.......)).)))))))....((((((.......))))))))))))).(((....))).)))).)))))...................... (-37.96 = -38.52 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:59 2006