Locus 7760

Sequence ID X_DroMel_CAF1
Location 19,309,107 – 19,309,227
Length 120
Max. P 0.747015
window12739

overview

Window 9

Location 19,309,107 – 19,309,227
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.72
Mean single sequence MFE -45.60
Consensus MFE -40.95
Energy contribution -41.33
Covariance contribution 0.37
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.90
SVM decision value 0.46
SVM RNA-class probability 0.747015
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19309107 120 - 22224390
UUUCUAGCGAGGAUUGGCCCAAACAGGGGCCGCAGAUCACGUGCCGGCACUGGGUCAAGUGGAAGGGCACGGCUGGAUCAGUUUUGCGAUGACGGAAACACUUGUUGCAAUGCACUCGAA
.......((((....(((((......)))))(((((((.((((((..((((......))))....))))))....))))....((((((..(.(....)..)..))))))))).)))).. ( -48.10)
>DroSim_CAF1 960 120 - 1
UUUCUAGCGAGGAUUGGCCCAAACAGGGCCCGCAGAUCACGUGCCGGCACUGGGUCAAGUGGAAGGGCACGGCCGGAUCAGUUUUGCGAUGACGGAAGCACUUGUUGCAAUGCACUCGAA
.......((((....(((((.....))))).(((((((.((((((..((((......))))....))))))....))))....((((((..((....)...)..))))))))).)))).. ( -46.20)
>DroEre_CAF1 1108 120 - 1
UUUCUUGCGAGGAUUGGCCCAAACAGGGGCCGCAGAUCACGUGCCGGCAUUGGGCCAAGUGGAAGGGCACGGUCGGAUCAGUUUUGCGAUGUCGAAAGCACUUGUUGCAAUGCACUCGAA
.......((((....(((((......)))))(((((((.(((((((((.....))).........))))))....))))....((((((((((....).))..)))))))))).)))).. ( -45.60)
>DroYak_CAF1 866 120 - 1
UUUCUUGCGAGGAUUGGCCCAAACAGGGGGCGCAGAUCACGUGCCGGCACUGGGUCAAGUGGAAGGGCACGGCCGGAUCAGUUUUGCGAUGAAGAAAGCACUUAUUGCAAUGCACUCGAA
.......((((.....((((.......))))(((((((.((((((..((((......))))....))))))....))))....(((((((((.........)))))))))))).)))).. ( -42.50)
>consensus
UUUCUAGCGAGGAUUGGCCCAAACAGGGGCCGCAGAUCACGUGCCGGCACUGGGUCAAGUGGAAGGGCACGGCCGGAUCAGUUUUGCGAUGACGAAAGCACUUGUUGCAAUGCACUCGAA
.......((((....(((((......)))))(((((((.((((((..((((......))))....))))))....))))....(((((((((.(......))))))))))))).)))).. (-40.95 = -41.33 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:58 2006