Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,157,439 – 2,157,554 |
Length | 115 |
Max. P | 0.690412 |
Location | 2,157,439 – 2,157,554 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.79 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -19.10 |
Energy contribution | -19.35 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.15 |
Mean z-score | -2.52 |
Structure conservation index | 0.68 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2157439 115 + 22224390 UAUUACCAUUCAAAAGGCCUGUG--CUUAUCAAGUCGCCG--CUACCAACUCCUCAAUUCUGUGGAUUUGGUCGGCAUAAAAAGUGGUCACCACGGCCCCAUCUUCAUUUCUCCCAUUU- ...............((((....--...........((((--..(((((.(((.((....)).))).))))))))).......((((...)))))))).....................- ( -29.30) >DroSec_CAF1 37794 114 + 1 UAUUACCAUUCAAAAGGCCUGUG--CUUAUCAAGUCGCCG--CUACCAACUCCUCAAUUCCCUGGAUUUGGUCGGCAUAAAAAGUGGUCACCACGGC-CCAUCUCCAUUUCUCCCAUUU- ...............((((....--...........((((--..(((((.(((..........))).))))))))).......((((...)))))))-)....................- ( -27.50) >DroSim_CAF1 35452 115 + 1 UAUUACCAUUCAAAAGGCCUGUG--CUUAUCAAGUCGCCG--CUACCAACUCCUCAAUUCCCUGGAUUUGGUCGGCAUAAAAAGUGGUCACCACGGCCCCAUCUCCAUUUCUCCCAUUU- ...............((((....--...........((((--..(((((.(((..........))).))))))))).......((((...)))))))).....................- ( -27.50) >DroEre_CAF1 38905 120 + 1 UAUUACCAUUCAAAAGGCCUGUGCGCUUAUCAAGUCGGUGCUCUACAAACUCUUCAAUUCUCUGCAUUUUGUCGGCCUAAAAAGUGGUCACCACGGACCCAUCUGUGGGCAUCCCAUUUU ....((((((....(((((.(.(((((.........))))).).(((((.....((......))...))))).)))))....))))))..(((((((....)))))))............ ( -28.20) >consensus UAUUACCAUUCAAAAGGCCUGUG__CUUAUCAAGUCGCCG__CUACCAACUCCUCAAUUCCCUGGAUUUGGUCGGCAUAAAAAGUGGUCACCACGGCCCCAUCUCCAUUUCUCCCAUUU_ ...............((((.................((((....(((((.(((..........))).))))))))).......((((...))))))))...................... (-19.10 = -19.35 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:35 2006