Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,304,886 – 19,304,979 |
Length | 93 |
Max. P | 0.999866 |
Location | 19,304,886 – 19,304,979 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 63.22 |
Mean single sequence MFE | -23.49 |
Consensus MFE | -11.77 |
Energy contribution | -11.33 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.27 |
Mean z-score | -2.81 |
Structure conservation index | 0.50 |
SVM decision value | 4.31 |
SVM RNA-class probability | 0.999866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19304886 93 + 22224390 -------------ACUAA----------GCAUCCAAAUCAGCAGCAAUCAUUCGCAAUACAUCAGUACGAAUAUACCCACAAAGUGUCGUUGAGUCCAAUGGGUAACAUUGAAUG--C -------------.....----------((((.(((.............(((((...(((....)))))))).(((((((.....)).((((....)))))))))...))).)))--) ( -14.60) >DroSec_CAF1 83270 81 + 1 -------------ACCAA----------GCAUUC---UCAUCAGCAAUC-----------AGCAGUACGAAUAUACCCGCAAAGUAUCGUUGAGUCCAAUGGGUAACAUUGGACAGCC -------------.....----------......---......((..((-----------(((.((((...............)))).)))))((((((((.....)))))))).)). ( -21.76) >DroEre_CAF1 79273 116 + 1 AAUAACGAAGCAAACGAAUGCAUAUUAGGCAUUC--AUCAGCCAUCAUCAUUUGAAAUACAUCAGAACAAAUAUGCCCGCAAAGCAUCGUUAAGUCCAAUGGGUAACAUUGGACAAAU ..((((((.((...((...(((((((.(((....--....))).......(((((......)))))...))))))).))....)).)))))).((((((((.....)))))))).... ( -34.10) >consensus _____________ACCAA__________GCAUUC__AUCAGCAGCAAUCAUU_G_AAUACAUCAGUACGAAUAUACCCGCAAAGUAUCGUUGAGUCCAAUGGGUAACAUUGGACA__C ...................................................................(((..((((.......))))..))).((((((((.....)))))))).... (-11.77 = -11.33 + -0.44)
Location | 19,304,886 – 19,304,979 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 63.22 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -11.88 |
Energy contribution | -11.67 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.19 |
Mean z-score | -2.16 |
Structure conservation index | 0.43 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19304886 93 - 22224390 G--CAUUCAAUGUUACCCAUUGGACUCAACGACACUUUGUGGGUAUAUUCGUACUGAUGUAUUGCGAAUGAUUGCUGCUGAUUUGGAUGC----------UUAGU------------- (--(((((((...(((((((.((...........))..)))))))((((((((.........))))))))............))))))))----------.....------------- ( -22.80) >DroSec_CAF1 83270 81 - 1 GGCUGUCCAAUGUUACCCAUUGGACUCAACGAUACUUUGCGGGUAUAUUCGUACUGCU-----------GAUUGCUGAUGA---GAAUGC----------UUGGU------------- ....((((((((.....))))))))..............(((((((.(((((...((.-----------....))..))))---).))))----------)))..------------- ( -23.50) >DroEre_CAF1 79273 116 - 1 AUUUGUCCAAUGUUACCCAUUGGACUUAACGAUGCUUUGCGGGCAUAUUUGUUCUGAUGUAUUUCAAAUGAUGAUGGCUGAU--GAAUGCCUAAUAUGCAUUCGUUUGCUUCGUUAUU ....((((((((.....)))))))).....(((((.(((.(((((....)))))))).)))))...((((((((.(((.(((--((((((.......))))))))).))))))))))) ( -36.20) >consensus G__UGUCCAAUGUUACCCAUUGGACUCAACGAUACUUUGCGGGUAUAUUCGUACUGAUGUAUU_C_AAUGAUUGCUGCUGAU__GAAUGC__________UUAGU_____________ ....((((((((.....))))))))...((((((((.....))))...)))).................................................................. (-11.88 = -11.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:54 2006