Locus 7756

Sequence ID X_DroMel_CAF1
Location 19,298,444 – 19,298,553
Length 109
Max. P 0.618032
window12733

overview

Window 3

Location 19,298,444 – 19,298,553
Length 109
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 86.96
Mean single sequence MFE -37.25
Consensus MFE -26.12
Energy contribution -26.12
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.70
SVM decision value 0.17
SVM RNA-class probability 0.618032
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19298444 109 + 22224390
UGCGAAGCUGCCUGUUUCGGCGGCACGUGUUCGGCGGCUCGUCGUCGCGGAUUAGCGCGAUA-AAUCCCGAUACAGCCGCGCCAGAACGAACAACAAAAUCAUCCGCAUC-
((((..((((((......))))))...((((((((((((.((.((((.(((((.........-))))))))))))))))).......))))))...........))))..- ( -42.01)
>DroSec_CAF1 76972 103 + 1
UGCGAAGCUGCCUGUUUGG---GCACGUGUUCGGCGGCUCGUCGUCGCGGAUUAGC--GAUA-AAUCCCGAUACAGCCGCGCCAGAACGAACGACAA-AUCAUCCCCAUC-
((((..(((((((....))---))).))((((.((((((.((.((((.(((((...--....-)))))))))))))))))....))))...)).)).-............- ( -34.00)
>DroEre_CAF1 72875 105 + 1
UGCGAAGCUGCCUCUAUUG---GCACGUGUUCGGCGGCUCGUCGUCGCGGAUUAGC--GACAAAAUCCCGAUACAGCCGCACCAGAACGCACGGCAA-AUCUGACCCAUAA
(((...(.((((......)---))))((((((.((((((.((.((((.(((((...--.....)))))))))))))))))....))))))...))).-............. ( -39.50)
>DroYak_CAF1 78131 104 + 1
UGCGAAGCUGCCUCCUUUG---GCACGUGUUCGGCGGCUCGUCGUCGCGGAUUAGC--GAUA-AAUCCCGAUACAGCCGCACCACAACGAACGACAA-AUCACAGCCAGAA
......((((((......)---))..(((((((((((((.((.((((.(((((...--....-))))))))))))))))).......))))).))..-.....)))..... ( -33.51)
>consensus
UGCGAAGCUGCCUCUUUUG___GCACGUGUUCGGCGGCUCGUCGUCGCGGAUUAGC__GAUA_AAUCCCGAUACAGCCGCACCAGAACGAACGACAA_AUCAUACCCAUA_
..(((((((((...........))).)).))))((((((.((.((((.(((((..........)))))))))))))))))............................... (-26.12 = -26.12 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:53 2006