Locus 7755

Sequence ID X_DroMel_CAF1
Location 19,296,983 – 19,297,077
Length 94
Max. P 0.630730
window12731 window12732

overview

Window 1

Location 19,296,983 – 19,297,077
Length 94
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 86.67
Mean single sequence MFE -32.10
Consensus MFE -22.19
Energy contribution -22.87
Covariance contribution 0.67
Combinations/Pair 1.12
Mean z-score -2.29
Structure conservation index 0.69
SVM decision value 0.20
SVM RNA-class probability 0.630730
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19296983 94 + 22224390
AAAGGACUAAACAGCAGAUUAAGGGGACGGUUACGGGGACAAGGACGAAUCUGAAUCCUUGUUUCUGCCUUUGUCGUCCCGCU--GUCAAUCUUUU
((((((....(((((........(((((((...(((..(((((((..........)))))))..)))......))))))))))--))...)))))) ( -31.50)
>DroSec_CAF1 75534 93 + 1
-AAGGACUAAGCAGCAAUUUAAGGGGACGGGCAUGGGGACAAGGACGAAUCCGAAUCCUUGUUUCUGCCUUUGUCGUCCCGCU--GUCAAUCUUUU
-(((((....(((((........((((((((((..(..(((((((((....))..)))))))..))))).....)))))))))--))...))))). ( -33.50)
>DroYak_CAF1 76685 95 + 1
-AAGGACUAAACAGCAGAUUAAGGGGACGAGGACGAGGACGAAUCCGCAUCGGAAUCCUUGUUUCUGCCUUUGUCGUCCCGCUGUGUCAAUCUCUU
-...(((...(((((.(((..(((((.((..((((((((....((((...)))).))))))))..)))))))...)))..))))))))........ ( -31.30)
>consensus
_AAGGACUAAACAGCAGAUUAAGGGGACGGGCACGGGGACAAGGACGAAUCCGAAUCCUUGUUUCUGCCUUUGUCGUCCCGCU__GUCAAUCUUUU
....(((.....(((........(((((((...((((((((((((..........))))))))))))......))))))))))..)))........ (-22.19 = -22.87 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 19,296,983 – 19,297,077
Length 94
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -30.60
Consensus MFE -19.64
Energy contribution -20.20
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -2.61
Structure conservation index 0.64
SVM decision value 0.19
SVM RNA-class probability 0.624196
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19296983 94 - 22224390
AAAAGAUUGAC--AGCGGGACGACAAAGGCAGAAACAAGGAUUCAGAUUCGUCCUUGUCCCCGUAACCGUCCCCUUAAUCUGCUGUUUAGUCCUUU
....(((((((--(((((((((.....((.....((((((((........))))))))..)).....))))))........)))).)))))).... ( -29.00)
>DroSec_CAF1 75534 93 - 1
AAAAGAUUGAC--AGCGGGACGACAAAGGCAGAAACAAGGAUUCGGAUUCGUCCUUGUCCCCAUGCCCGUCCCCUUAAAUUGCUGCUUAGUCCUU-
....(((((((--(((((((((.....((((...((((((((........)))))))).....))))))))))........)))).))))))...- ( -32.70)
>DroYak_CAF1 76685 95 - 1
AAGAGAUUGACACAGCGGGACGACAAAGGCAGAAACAAGGAUUCCGAUGCGGAUUCGUCCUCGUCCUCGUCCCCUUAAUCUGCUGUUUAGUCCUU-
(((.((((((.((((((((((((....((.....((.(((((((((...))))...))))).)))))))))))........))))))))))))))- ( -30.10)
>consensus
AAAAGAUUGAC__AGCGGGACGACAAAGGCAGAAACAAGGAUUCAGAUUCGUCCUUGUCCCCGUACCCGUCCCCUUAAUCUGCUGUUUAGUCCUU_
....((((((...(((((((((.....((.....((((((((........))))))))..)).....))))))........)))..)))))).... (-19.64 = -20.20 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:52 2006