| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,296,608 – 19,296,698 |
| Length | 90 |
| Max. P | 0.570685 |
| Location | 19,296,608 – 19,296,698 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.56 |
| Mean single sequence MFE | -28.16 |
| Consensus MFE | -11.24 |
| Energy contribution | -12.44 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19296608 90 - 22224390 UGG-----GGAGUGG-------GCGGCUUUCCUCUUAAGCAAGUGCAAACAAGACACAAAAAAUGGUGAGUUUGUGCGGCUGAAG------------AGGACCGCCUCUUUAGC ...-----((((.((-------((((...(((((((.(((..(..(((((....(((........))).)))))..).))).)))------------))))))))))))))... ( -36.10) >DroSec_CAF1 75180 90 - 1 UGG-----GUAGUGG-------GCGGCUUUCCUCUUAAGCAAGUGCAAACAAGACACAAAAAAUGGUGAGUUUGUGCGGCUGAAG------------AGGACCGCCUCUUUAGC ..(-----.(((.((-------((((...(((((((.(((..(..(((((....(((........))).)))))..).))).)))------------))))))))))..))).) ( -34.00) >DroEre_CAF1 71258 88 - 1 UGG-----GAAAUGG-------GUGGCUUUUCUCUUAAGCAAGUGCAAACAAGACACAAAAAAUGGUGAGUUUGUGCGGCUGAA--------------GGACCGCCUCUUUAGC ...-----.(((.((-------(((((((((......(((..(..(((((....(((........))).)))))..).))))))--------------)).)))))).)))... ( -24.00) >DroYak_CAF1 76315 102 - 1 UGG-----GAAAUGG-------GUGGCUUUGCUCUUAAGCAAGUGCAAACAAGACACAAAAAAUGGUGAGUUUGUGCGGCUGAAGGACGAAGGACGAAGGACCGCCUCUUUAGC ...-----.(((.((-------(((((((((..(((.(((..(..(((((....(((........))).)))))..).))).)))..)))))..(....).)))))).)))... ( -31.30) >DroAna_CAF1 50240 89 - 1 AGAGACCCAAAGCGGACGUGCAGAAGCUUUUCUUUUAAGCAAGUGCAAACAAGACAACA-----------UUUCUGAGAGUGAA--------------GGACCGCCUUUUUAGC ...........((((...((((...((((.......))))...))))..........((-----------(((....)))))..--------------...))))......... ( -15.40) >consensus UGG_____GAAGUGG_______GCGGCUUUCCUCUUAAGCAAGUGCAAACAAGACACAAAAAAUGGUGAGUUUGUGCGGCUGAAG____________AGGACCGCCUCUUUAGC ........((.((((..........((((.......))))..((((((((....(((........))).))))))))........................)))).))...... (-11.24 = -12.44 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:50 2006