Locus 7752

Sequence ID X_DroMel_CAF1
Location 19,287,093 – 19,287,213
Length 120
Max. P 0.544216
window12726

overview

Window 6

Location 19,287,093 – 19,287,213
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.23
Mean single sequence MFE -34.99
Consensus MFE -24.68
Energy contribution -24.12
Covariance contribution -0.56
Combinations/Pair 1.15
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.02
SVM RNA-class probability 0.544216
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19287093 120 + 22224390
UCAGGGGCUUAGAGGUUAGCUUCACAGUUCUGGCUCGCCUAACUGGCUGGCCGUGCACUGAAAGAAAAGCAGUAUCACGAAUCGCAGGCAUGGGCAAACUUGCCUUGAGUGCAAUCCACG
...(((((((.((((....)))).((((.((((((.(((.....))).))))).).))))......)))).............(((..((.(((((....)))))))..)))..)))... ( -39.70)
>DroSec_CAF1 65749 103 + 1
UCAGGGGCUUAGAGCUUAGCUUCACAGUUCUGGCCCGCCUAACUGGCUGGUCGUGCACUGAAGGAAAAGCAGUGUCACGAAACGCAA-----------------UUGAAUGCAAUCCACG
....(((((.((((((.........)))))))))))(((.....)))(((((((((((((.........))))).)))))...(((.-----------------.....)))...))).. ( -35.60)
>DroSim_CAF1 70125 103 + 1
UCAGGGGCUUAGAGCUUAGCUUCACAGUUCUGGCCCGCCUAACUGGCUGGUCGUGCACUGAAAGAAAAGCAGUGUCACGAAACGCAA-----------------UUGAAUGCAAUCCACG
....(((((.((((((.........)))))))))))(((.....)))(((((((((((((.........))))).)))))...(((.-----------------.....)))...))).. ( -35.60)
>DroEre_CAF1 62314 110 + 1
UCAGGAGCUUAGAGCUUAGCUUCACAGUUUUGGCCCGCCUAACUGGCUGGCCGUGCACUGAAAGAAAAGCAGCAUCACGAAUCGCAC----------ACUUGCCUUGCAUGCAGUCGACA
...((((((........)))))).((((..(((((.(((.....))).)))))...))))...((...((((((...(((.......----------..)))...))).)))..)).... ( -33.10)
>DroYak_CAF1 66871 96 + 1
UCAGGGGCUUAGAGCUUAGCUUCACAGUUUUGGCCCGCCUAACUGGCUGGCCGUGCACUGAGAGAAAAACAUGUGCAUGAAACGCAA------------------------GAAUCCACA
...((((((........))))))...(((((((((.(((.....))).))))((((((..............)))))))))))....------------------------......... ( -30.94)
>consensus
UCAGGGGCUUAGAGCUUAGCUUCACAGUUCUGGCCCGCCUAACUGGCUGGCCGUGCACUGAAAGAAAAGCAGUAUCACGAAACGCAA_________________UUGAAUGCAAUCCACG
((.((((((........)))))).((((..(((((.(((.....))).)))))...))))..................))........................................ (-24.68 = -24.12 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:47 2006