Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,285,133 – 19,285,248 |
Length | 115 |
Max. P | 0.937304 |
Location | 19,285,133 – 19,285,248 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 89.52 |
Mean single sequence MFE | -29.27 |
Consensus MFE | -24.87 |
Energy contribution | -25.10 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.06 |
Mean z-score | -1.78 |
Structure conservation index | 0.85 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19285133 115 - 22224390 AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCACAGCUCCUGUGUAUAAUUAUAGCCUUGCAAGAAAAGGGGGUGUCACAAUUUGUUU (((((((...((((.((((...))))....(((((.((.(((..(((.....(((((.(((((...))))).)))))...)))..)))......)))))))))))...))))))) ( -28.20) >DroSec_CAF1 64071 111 - 1 AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCUCCGCUCCUGUGUAUAAUUAUACCCUUGCA----AAGAGGGUGUCACAAUUUGUUU (((((((...(((((((((((((.((....(((.....)))(.((....)))..........)).)))).)))))))))(((((((...----..)))))))......))))))) ( -30.80) >DroSim_CAF1 68408 111 - 1 AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCUCAGCUCCUGUGUAUAAUUAUACCCUUGCA----AAGAGGGUGUCACAAUUUGUUU (((((((...(((((((((((((.(((.......((.(((((.....))).)).)).....))).)))).)))))))))(((((((...----..)))))))......))))))) ( -32.20) >DroEre_CAF1 60705 111 - 1 AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCUCUGCUCCUGUGUAUAAUUAUACCCUUGCA----AAGAGGGUGUCACAAUUUGUUC .((((((...(((((((((((((.((........((.(((((.....))).)).))......)).)))).)))))))))(((((((...----..)))))))......)))))). ( -30.84) >DroYak_CAF1 65094 94 - 1 AAACAAAGUUUGAUUGUAUCAGGUGCU-----------------GCUCGCUCAUUGUUCUCUGCUCCAGUGUAUAAUUAUACCCUCGCA----AAGAGGGUGUCACAAUUUGUUC .((((((...(((((((((..((.((.-----------------....((.....)).....)).))...)))))))))(((((((...----..)))))))......)))))). ( -24.30) >consensus AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCUCAGCUCCUGUGUAUAAUUAUACCCUUGCA____AAGAGGGUGUCACAAUUUGUUU .((((((...(((((((((((((.((....(((.....))).......((.....)).....)).)))).)))))))))(((((((.........)))))))......)))))). (-24.87 = -25.10 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:46 2006