| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,270,038 – 19,270,143 |
| Length | 105 |
| Max. P | 0.974995 |
| Location | 19,270,038 – 19,270,143 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.42 |
| Mean single sequence MFE | -29.76 |
| Consensus MFE | -20.86 |
| Energy contribution | -20.74 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.974995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19270038 105 + 22224390 ACGGCUAUUUGCUAAUACA-------GCUGC-----CAG-AGCCCCGAAGAUCUCU--GGGCGCGAUACAAAAGAAUCAAAUUGGUUCUGACAUCGCAUUGGGGCAUUCAACAGAUACAG ..(((.....(((.....)-------)).))-----)..-.(((((((((....))--....(((((.....((((((.....))))))...))))).)))))))............... ( -31.50) >DroSec_CAF1 56849 96 + 1 --------CUGCUAAUACUGUACUGUGCUGC-----CAAAAGCCCCGAAGA--UCU--GGGCGCGAUACAAAGGAAUCAAAUUGGUUCUGACAUCGCAUUG-GGCAUUCAACAG------ --------.........((((...((((..(-----(((..((((.(....--.).--))))(((((.....((((((.....))))))...))))).)))-)))))...))))------ ( -30.80) >DroSim_CAF1 61107 101 + 1 --------CUGCUAAUACUACACUGUGCUGC-----CAAAAGCCCCGAA-A--UCU--GGGCGCGAUACAAAGGAAUCAAAUUGGUUCUGACAUCGCAUUG-GGCAUUCAACAGAUACAG --------..............((((..(((-----(....((((.(..-.--.).--))))(((((.....((((((.....))))))...)))))....-))))....))))...... ( -30.80) >DroEre_CAF1 53472 107 + 1 ACGACUAC-UACUAACAUU-------GGCUCAUGGACUAGAGCCCCAAAGA--UCU--GGGCGCGAUACAAAAGAAUCAAAUUGGUUCUGACAUCGCAUUG-GGCAUUCAACAGAUACAG ........-..........-------.(((((.........((((......--...--))))(((((.....((((((.....))))))...)))))..))-)))............... ( -25.00) >DroYak_CAF1 57520 103 + 1 ACGGCUAC-AACUAAUACU-------GCUGCAU------GAGCCCCAAAGA--UUUUGGGGCGCGAUACAAAAGAAUCAAAUUGGUUCUGACAUCGCAUUG-GGCAUUCAACAGAUACAG ........-........((-------(.((.((------(.(((((((...--..)))))))(((((.....((((((.....))))))...)))))....-..))).)).)))...... ( -30.70) >consensus ACG_CUA__UGCUAAUACU_______GCUGC_____CAAAAGCCCCGAAGA__UCU__GGGCGCGAUACAAAAGAAUCAAAUUGGUUCUGACAUCGCAUUG_GGCAUUCAACAGAUACAG ..........................(((............((((...((....))..))))(((((.....((((((.....))))))...))))).....)))............... (-20.86 = -20.74 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:37 2006