Locus 7746

Sequence ID X_DroMel_CAF1
Location 19,266,763 – 19,266,865
Length 102
Max. P 0.928994
window12714

overview

Window 4

Location 19,266,763 – 19,266,865
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.75
Mean single sequence MFE -19.86
Consensus MFE -12.98
Energy contribution -13.38
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.65
SVM decision value 1.19
SVM RNA-class probability 0.928994
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19266763 102 - 22224390
UUGGUGGUCGCCCAUUAGGCGCCUAAUCGAGCGUGCCAC-----------CCAUCAUAUCCCGAUAUCCCCAUAUCCCCGCAUCCCCC-CCCCCCAUGUUAUCCCCAUAUAUCC------
..((((((((((.(((((....))))).).))).)))))-----------)...........(((((....)))))............-.........................------ ( -20.30)
>DroSec_CAF1 53842 79 - 1
UUGGUGGUCGCCCAUUAGGUGCCUAAUCGAGCGUGCCAC-----------CCAUCAUAUCCCGAUA----------------U------CCCCCCAUGGUAUCCCCAA--AUCC------
..((((((((((.(((((....))))).).))).)))))-----------)...........((((----------------(------(.......)))))).....--....------ ( -22.50)
>DroSim_CAF1 58067 90 - 1
UUGGUGGUCGCCCAUUAGGCGCCUAAUCGAGCGUGCCAC-----------CCAUCAUAUCCCGAUAUCCCC-----CCGAUAU------CCCCCCAUGGUAUCCCCAA--AUCC------
..((((((((((.(((((....))))).).))).)))))-----------).(((((.....((((((...-----..)))))------).....)))))........--....------ ( -25.80)
>DroEre_CAF1 50496 102 - 1
UUAGUGGUCGCCCAUUAGGUGCCUAAUCGAGCGUGCCUCCCAUCCGUAAGCCAUCAUAUCCCGAUAUU--------GCCAUAUCCCAGAAUCCCCAUGC--ACCCCAA--UCCC------
.((((((....))))))(((((......(.((.(((.........))).)))..........(((((.--------...))))).............))--)))....--....------ ( -16.10)
>DroYak_CAF1 54479 116 - 1
UUAGUGGUCGCCCAUUAGGCGCCUAAUCGAGCGUGCCUCCCAUCCGUAACCCAUCAUAUCCCGAUAUCCCUGAAUCCCCCUAUCCCUGAAUCCCCAUAU--CCCUGAA--UCCUCAUAUC
((((.(((..(.....((((((((.....)).)))))).......)..)))...........(((((....((.((...........)).))...))))--).)))).--.......... ( -14.60)
>consensus
UUGGUGGUCGCCCAUUAGGCGCCUAAUCGAGCGUGCCAC___________CCAUCAUAUCCCGAUAUCCC______CCCAUAUCCC___CCCCCCAUGGUAUCCCCAA__AUCC______
...(((((((((.(((((....))))).).))).)))))................................................................................. (-12.98 = -13.38 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:36 2006