| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,252,123 – 19,252,238 |
| Length | 115 |
| Max. P | 0.760518 |
| Location | 19,252,123 – 19,252,238 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 84.18 |
| Mean single sequence MFE | -24.93 |
| Consensus MFE | -22.20 |
| Energy contribution | -22.53 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19252123 115 + 22224390 CUGAAUCUGAAUCUAAAAAUGCAAAUGCAAAUGCCACUAACAACGACAUCAAUAUUUCGGCGCCAGUAGUGCAGUUGCAGUUGCAGUUGCAGUUGCACUGCGCUCACCACCCUCA ......(((..........(((....)))...(((.......................)))..))).((((((((.(((..(((....)))..)))))))))))........... ( -27.70) >DroSec_CAF1 38839 105 + 1 CUGAAUCUGAAUCUAAAAAUGCAAAUGCAAAUGCCACUAACAACGACAUCAAUAUUUCGGCGCCACUAGUGCAGUUGCAGUUGCAGUUGCAG------UGCGCUCGC----CUCA ...................(((((.(((((.(((.(((.....(((.((....)).)))((((.....))))))).))).))))).)))))(------.((....))----)... ( -24.30) >DroSim_CAF1 40300 91 + 1 CAGAAUCUGAAUCUAAAAAUGCAAAUGCAAAUGCCACUAACAACGACAUCAAUAUUUCGGCGCCAGUAGUGCAGUUGCAGUUGCAGUUGC------------------------A ...................(((((.(((((.(((.(((.....(((.((....)).)))((((.....))))))).))).))))).))))------------------------) ( -22.80) >consensus CUGAAUCUGAAUCUAAAAAUGCAAAUGCAAAUGCCACUAACAACGACAUCAAUAUUUCGGCGCCAGUAGUGCAGUUGCAGUUGCAGUUGCAG______UGCGCUC_C____CUCA ...................(((((.(((((.(((.(((.....(((.((....)).)))((((.....))))))).))).))))).)))))........................ (-22.20 = -22.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:28 2006