Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,150,813 – 2,150,904 |
Length | 91 |
Max. P | 0.718290 |
Location | 2,150,813 – 2,150,904 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.97 |
Mean single sequence MFE | -17.64 |
Consensus MFE | -13.10 |
Energy contribution | -13.38 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.35 |
Structure conservation index | 0.74 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2150813 91 + 22224390 UGUGUGCGAGCACAAAGAGACAAUGCAAAUUUGCACUCAAACAAAGAGAGA-----------GCGAGUGCAA--GUGCGAGUGCGAG-AGAAAGGGAA---------GAGUUCA ..((..(..((((.....(......)....((((((((.............-----------..))))))))--))))..)..))..-..........---------....... ( -20.56) >DroSec_CAF1 30988 79 + 1 UGUGUGCGAGCACAAAGAGACGAUGCAAAUUUGCACUCAAACAAAGAGA-------------------------GUGCGAGUGCGAG-AGAAAGGGAA---------GAGUUCA (((((....))))).........((((...((((((((.........))-------------------------)))))).))))..-..........---------....... ( -18.90) >DroSim_CAF1 28489 79 + 1 UGUGUGCGAGCACAAAGAGACAAUGCAAAUUUGCACUCAAACAAAGAGA-------------------------GUGCGAGUGCGAG-AGAAAGGGAA---------GAGUUCA (((((....))))).........((((...((((((((.........))-------------------------)))))).))))..-..........---------....... ( -18.90) >DroEre_CAF1 32104 79 + 1 UGUGUGCGAGCACAAAGAGACAAUGCAAAUUUGCACUCAAACAAAGAGA-------------------------AUGCGAGUGCGAG-AGAAAGGGAA---------GAGUUCA (((((....)))))...............(((((((((...........-------------------------....)))))))))-..........---------....... ( -15.06) >DroYak_CAF1 34232 78 + 1 UGU-UGCGAGCACAAAGAGACAAUGCAAAUUUGCACUCAAACAAAGAGA-------------------------GUGCGAGUGCGAG-AGAAAGGGAA---------GAGUUCA (.(-(((..(((...........)))..((((((((((.........))-------------------------)))))))))))).-).........---------....... ( -17.30) >DroAna_CAF1 37614 113 + 1 CGUG-GCAAUCACAAAGAGACAAUGCAAAUUUGCACUCAAACAAAGAGACAAACAAGAUGAGACGAGCGAUGGUGUGGGAGGGUGAGGAGAUGGGGAAGUGGGGGAGCAGUUCA (.(.-((..(((((.........((((....))))(((.......))).........................)))))....)).).).......(((.((......)).))). ( -15.10) >consensus UGUGUGCGAGCACAAAGAGACAAUGCAAAUUUGCACUCAAACAAAGAGA_________________________GUGCGAGUGCGAG_AGAAAGGGAA_________GAGUUCA ..(((((..((((..........((((....))))(((.......)))..........................))))..)))))............................. (-13.10 = -13.38 + 0.28)
Location | 2,150,813 – 2,150,904 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.97 |
Mean single sequence MFE | -14.95 |
Consensus MFE | -8.14 |
Energy contribution | -8.50 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.08 |
Mean z-score | -1.98 |
Structure conservation index | 0.54 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2150813 91 - 22224390 UGAACUC---------UUCCCUUUCU-CUCGCACUCGCAC--UUGCACUCGC-----------UCUCUCUUUGUUUGAGUGCAAAUUUGCAUUGUCUCUUUGUGCUCGCACACA .......---------..........-.........(((.--(((((((((.-----------.(.......)..)))))))))...)))..........((((....)))).. ( -18.70) >DroSec_CAF1 30988 79 - 1 UGAACUC---------UUCCCUUUCU-CUCGCACUCGCAC-------------------------UCUCUUUGUUUGAGUGCAAAUUUGCAUCGUCUCUUUGUGCUCGCACACA .......---------..........-...(((((((.((-------------------------.......)).)))))))..................((((....)))).. ( -15.60) >DroSim_CAF1 28489 79 - 1 UGAACUC---------UUCCCUUUCU-CUCGCACUCGCAC-------------------------UCUCUUUGUUUGAGUGCAAAUUUGCAUUGUCUCUUUGUGCUCGCACACA .......---------..........-...(((((((.((-------------------------.......)).)))))))..................((((....)))).. ( -15.60) >DroEre_CAF1 32104 79 - 1 UGAACUC---------UUCCCUUUCU-CUCGCACUCGCAU-------------------------UCUCUUUGUUUGAGUGCAAAUUUGCAUUGUCUCUUUGUGCUCGCACACA .......---------..........-...(((((((((.-------------------------......)))..))))))..................((((....)))).. ( -14.10) >DroYak_CAF1 34232 78 - 1 UGAACUC---------UUCCCUUUCU-CUCGCACUCGCAC-------------------------UCUCUUUGUUUGAGUGCAAAUUUGCAUUGUCUCUUUGUGCUCGCA-ACA .......---------..........-...((....((((-------------------------((.........))))))......((((.........))))..)).-... ( -15.10) >DroAna_CAF1 37614 113 - 1 UGAACUGCUCCCCCACUUCCCCAUCUCCUCACCCUCCCACACCAUCGCUCGUCUCAUCUUGUUUGUCUCUUUGUUUGAGUGCAAAUUUGCAUUGUCUCUUUGUGAUUGC-CACG ...........................................(((((......((.(..(((((((((.......))).))))))..)...)).......)))))...-.... ( -10.62) >consensus UGAACUC_________UUCCCUUUCU_CUCGCACUCGCAC_________________________UCUCUUUGUUUGAGUGCAAAUUUGCAUUGUCUCUUUGUGCUCGCACACA .......................................................................(((.((((((((((.............)))))))))).))).. ( -8.14 = -8.50 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:32 2006