Locus 7735

Sequence ID X_DroMel_CAF1
Location 19,248,461 – 19,248,605
Length 144
Max. P 0.998429
window12690 window12691

overview

Window 0

Location 19,248,461 – 19,248,569
Length 108
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 89.30
Mean single sequence MFE -24.67
Consensus MFE -23.27
Energy contribution -23.52
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -3.16
Structure conservation index 0.94
SVM decision value 3.10
SVM RNA-class probability 0.998429
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19248461 108 + 22224390
UGAGCACAUAAGUGUCAUAAUCACACACACACAUAGCUACACAUAGCUACACAUGCAUUUGCUUACUUGAGCUAGAGAUUUACCUUCAAGUGAGCAGCUCAGCUUUUU
(((((.(((..((((.......)))).......((((((....))))))...)))....((((((((((((.............)))))))))))))))))....... ( -29.32)
>DroSec_CAF1 35335 94 + 1
UGAGCACAUAAGUGUCAUAAUCACACACAC--------------AGCUACACAUGCAUUUGCUUACUUGAGCUAGAGAUUUACCUUCAAGUGAGCAGCUCAGCUUUUU
(((((......((((.......))))....--------------.((.......))...((((((((((((.............)))))))))))))))))....... ( -25.32)
>DroEre_CAF1 32737 94 + 1
UGAGCACAUAAGUGUCAUAAUCACAC--------------ACACAGCUACACAUGCAUUUGCUUACUUGAGCUACAGAUUUACCUUCAAGUGAACAGCUCAGCUUUUU
(((((......((((.......))))--------------.....((.......))...((.(((((((((.............))))))))).)))))))....... ( -18.72)
>DroYak_CAF1 34574 102 + 1
UGAGCACAUAAGUGUCAUAAUCACACACACACA------CACACAGCUACACAUGCAUUUGCUUACUUGAGCUACAGAUUUACCUUCAAGUGAGCAGCUCAGCUUUUU
(((((......((((.......)))).......------......((.......))...((((((((((((.............)))))))))))))))))....... ( -25.32)
>consensus
UGAGCACAUAAGUGUCAUAAUCACACACAC__________ACACAGCUACACAUGCAUUUGCUUACUUGAGCUACAGAUUUACCUUCAAGUGAGCAGCUCAGCUUUUU
(((((......((((.......))))...................((.......))...((((((((((((.............)))))))))))))))))....... (-23.27 = -23.52 +   0.25)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 1

Location 19,248,494 – 19,248,605
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 89.80
Mean single sequence MFE -22.77
Consensus MFE -17.30
Energy contribution -17.55
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.76
SVM decision value 0.09
SVM RNA-class probability 0.579899
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19248494 111 + 22224390
UAGCUACACAUAGCUACACAUGCAUUUGCUUACUUGAGCUAGAGAUUUACCUUCAAGUGAGCAGCUCAGCUUUUUAACACUUUUACUUUCAGCAAUACUCAGCAGCGGUGG
((((((....))))))(((.(((..(((((((((((((.............)))))))))))))....(((...................)))........)))...))). ( -27.13)
>DroSec_CAF1 35365 100 + 1
-----------AGCUACACAUGCAUUUGCUUACUUGAGCUAGAGAUUUACCUUCAAGUGAGCAGCUCAGCUUUUUCACACUUUUACUUUCAGCAAUACUCAGCAGCGGUGG
-----------..((((...(((..(((((((((((((.............)))))))))))))....(((...................)))........)))...)))) ( -22.53)
>DroEre_CAF1 32763 104 + 1
-------ACACAGCUACACAUGCAUUUGCUUACUUGAGCUACAGAUUUACCUUCAAGUGAACAGCUCAGCUUUUUAACACUUUUACUUUCAGCAAUACUCAGCAGUAGGCA
-------.....((.......))...((((((((((((((...(.(((((......)))))))))))).......................((........)))))))))) ( -19.70)
>DroYak_CAF1 34607 105 + 1
------CACACAGCUACACAUGCAUUUGCUUACUUGAGCUACAGAUUUACCUUCAAGUGAGCAGCUCAGCUUUUUAACACUUUUACUUUCAGCAAUACUCAGCAGUAGGCA
------......(((..((.(((..(((((((((((((.............)))))))))))))....(((...................)))........))))).))). ( -21.73)
>consensus
_______ACACAGCUACACAUGCAUUUGCUUACUUGAGCUACAGAUUUACCUUCAAGUGAGCAGCUCAGCUUUUUAACACUUUUACUUUCAGCAAUACUCAGCAGCAGGCA
............(((.....(((...((((((((((((.............))))))))))))((...)).....................)))......)))........ (-17.30 = -17.55 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:17 2006