Locus 7734

Sequence ID X_DroMel_CAF1
Location 19,243,853 – 19,243,973
Length 120
Max. P 0.610403
window12689

overview

Window 9

Location 19,243,853 – 19,243,973
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.21
Mean single sequence MFE -20.58
Consensus MFE -17.14
Energy contribution -17.88
Covariance contribution 0.74
Combinations/Pair 1.04
Mean z-score -1.44
Structure conservation index 0.83
SVM decision value 0.16
SVM RNA-class probability 0.610403
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19243853 120 + 22224390
GCAACAUAUUAAAGCGUUAAAGAUAUUAUAUUAUUCACGAAAACAAUGCACUCUUUCACCGCGUGAUUUAUCGAUUUUGACAAUGUUCAUUUUGCCUGAAAAGGCAUAACGCUUAAAUUA
...........(((((((((((((...(((((..(((((((((..((((...........))))..))).)))....))).)))))..)))))((((....)))).))))))))...... ( -23.30)
>DroSec_CAF1 30770 101 + 1
GCAUCACAUUAAAGCGUUAAAGAUAU-----UAUUCACGAAAACAAUGCACUCUUUCACCGCGUGAUUUAUCGAUUU--------------AUGCCUCGAAAAGCAUAACGCUUCAAUUA
.......(((.((((((((..((((.-----...(((((.....((........)).....)))))..)))).....--------------.(((........))))))))))).))).. ( -17.80)
>DroSim_CAF1 27349 115 + 1
GCAUCACAUUAAAGCGUUAAAGAUAU-----UAUUCACGAAAACAAUGCACUCUUUCACCGCGUGAUUUAUCGAUUUUGACAAUGUUCAUUUUGCCUCGAAAGGCAUAACGCUUAAAUUA
...........((((((((..((((.-----...(((((.....((........)).....)))))..))))....................(((((....)))))))))))))...... ( -22.60)
>DroEre_CAF1 28418 115 + 1
GCAUCACAUUAAAGUGUUAAAGAUAU-----UAUUCACGAAAACAAUGUACUUUUUCAUCGCGUGAUUUAUCGAUUUUGACAAUGUUAAUUUUGCCUCAAAAGGCAUAACGCUUAAAUUA
...........((((((((..((((.-----...(((((......(((........)))..)))))..))))....................(((((....)))))))))))))...... ( -21.60)
>DroYak_CAF1 29961 114 + 1
GCA-CACAUUAAAGCACUAAAGAUAU-----UAUUCACGAAAACAAUGUACUCUUUCACCGCGUGAUUUAUCGAUUUUGACAAUGUUCAUUUUGCCUCAAAAGGCAUAACGCUUAAAUUA
...-.......((((......((((.-----...(((((........(....)........)))))..))))....................(((((....)))))....))))...... ( -17.59)
>consensus
GCAUCACAUUAAAGCGUUAAAGAUAU_____UAUUCACGAAAACAAUGCACUCUUUCACCGCGUGAUUUAUCGAUUUUGACAAUGUUCAUUUUGCCUCAAAAGGCAUAACGCUUAAAUUA
...........((((((((..((((.........(((((.....((........)).....)))))..))))....................(((((....)))))))))))))...... (-17.14 = -17.88 +   0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:15 2006