Locus 7731

Sequence ID X_DroMel_CAF1
Location 19,239,495 – 19,239,598
Length 103
Max. P 0.826952
window12683

overview

Window 3

Location 19,239,495 – 19,239,598
Length 103
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 84.87
Mean single sequence MFE -34.95
Consensus MFE -26.76
Energy contribution -26.70
Covariance contribution -0.06
Combinations/Pair 1.13
Mean z-score -1.89
Structure conservation index 0.77
SVM decision value 0.70
SVM RNA-class probability 0.826952
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19239495 103 + 22224390
UGCGAGCAAGAUUUGUUCGCCAGAUGCUGCGAUGCCGCCGAUAUCGGUGGAUGGAUGUGAACGUGGCCAGUGGAAAGUUUCAAGGUUGCUGGUUGCUGGUUGC
.(((((((.....)))))))((.((.(.......((((((....))))))..).)).))...(..(((((..(..(((.........)))..)..)))))..) ( -37.80)
>DroSec_CAF1 26488 96 + 1
UGCGAGCGAGAUUUGCUCGCCAGAU---GCGAUGCCGCCGAUAUCGGUGG----AUUUGAACGUGGCCUGUGGAAAGUUUCAAGGUUGCUGCUGGCUGGUUAC
.((((((((...))))))))(((..---(((...((((((....))))))----........(..((((.((((....))))))))..))))...)))..... ( -37.60)
>DroSim_CAF1 23013 94 + 1
UGCGAGCGAGAUUUGUUCGCCAGAU---GCGAUGCCGCCGAUAUCGGUGG----AUGUGAACGUGGCCUGUGGAAAGUUUCAAGGUUGCUGCUGGCUGGUU--
.((((((((...))))))))(((..---(((...((((((....))))))----........(..((((.((((....))))))))..))))...)))...-- ( -35.20)
>DroEre_CAF1 24241 84 + 1
UGCGAGCGAGAUUUGUUCGCCAGAU---GCGAUGCCGCCGAUAUUGGGGG----UUCUGAAAGUGGCCUGUGGAAAGUUUCAAGGUUGCUG------------
.((((((((...))))))))((((.---.....(((.(((....))).))----)))))..((..((((.((((....))))))))..)).------------ ( -29.20)
>consensus
UGCGAGCGAGAUUUGUUCGCCAGAU___GCGAUGCCGCCGAUAUCGGUGG____AUGUGAACGUGGCCUGUGGAAAGUUUCAAGGUUGCUGCUGGCUGGUU__
.((((((((...))))))))..............((((((....))))))............(..((((.((((....))))))))..).............. (-26.76 = -26.70 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:10 2006