Locus 7730

Sequence ID X_DroMel_CAF1
Location 19,237,637 – 19,237,736
Length 99
Max. P 0.995842
window12682

overview

Window 2

Location 19,237,637 – 19,237,736
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 95.36
Mean single sequence MFE -21.34
Consensus MFE -19.64
Energy contribution -20.08
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.89
Structure conservation index 0.92
SVM decision value 2.62
SVM RNA-class probability 0.995842
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19237637 99 - 22224390
-GAGUGACCUCGAGUUAUAUAAACUCGUGCUAAACAAAUGUGACGGCUCCUUCGACCGAAAAACACCAGAAAUUGAGAGGUCAUAAAUAACUUAUUUUCA
-..(((((((((((((.....)))))(((....((....))..(((.((....))))).....)))..........))))))))................ ( -22.20)
>DroSec_CAF1 24584 98 - 1
--AGUGACCUCGAGUUAUAUAAACUCGUGCUAAACAAAUGUGACGGCUCCUCCGACCGAAAAACACCAGAAAUUGAGAGGUCAUAAAUAACUUAUUUCCA
--.(((((((((((((.....)))))(((....((....))..(((.((....))))).....)))..........))))))))................ ( -22.20)
>DroSim_CAF1 21143 98 - 1
--AGUGACCUCGAGUUAUAUAAACUCGUGCUAAACAAAUGUGACGGCUCCUCCGACCGAAAAACACCAGAAAUUGAGAGGUCAUAAAUAACUUAUUUCCA
--.(((((((((((((.....)))))(((....((....))..(((.((....))))).....)))..........))))))))................ ( -22.20)
>DroEre_CAF1 22439 95 - 1
-----GACCUCGAGUUGUAUAAACUCGUGCUAAACAAAUGUGACGGCUCCUCCGACCGAAAAACACCAAAAAUUGAGAGGUCAUAAAUAACUUAUUUCCA
-----(((((((((((.....)))))(((....((....))..(((.((....))))).....)))..........)))))).................. ( -20.80)
>DroYak_CAF1 23419 100 - 1
UGAGUGAGUUCGAGUUAUAUAAACUCGUGCUAAACAAAUGUGACGGCUCCUCCGACCGAAAAACACCAGAAAUUGAGAGGUCAUAAAUAACUUAUUUCCA
(((((.(((.((((((.....)))))).))).......((((((..(((.........................)))..))))))....)))))...... ( -19.31)
>consensus
__AGUGACCUCGAGUUAUAUAAACUCGUGCUAAACAAAUGUGACGGCUCCUCCGACCGAAAAACACCAGAAAUUGAGAGGUCAUAAAUAACUUAUUUCCA
...(((((((((((((.....)))))(((....((....))..(((.((....))))).....)))..........))))))))................ (-19.64 = -20.08 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:09 2006