Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,148,273 – 2,148,383 |
Length | 110 |
Max. P | 0.564367 |
Location | 2,148,273 – 2,148,383 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.07 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -21.61 |
Energy contribution | -22.73 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.58 |
Structure conservation index | 0.75 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2148273 110 + 22224390 UUGUAAGAGAUCACUGACGAUU-GCACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCAC---------UAAUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAA .....(((((((((((.(((((-(((.......)))))...(((((((((......))))).)---------)))))))))).)))))))............((((.....))))..... ( -29.80) >DroSec_CAF1 28471 110 + 1 UUGUAAGAGAUCACUGGCGAUU-GCACGACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCAC---------UAAUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAA .....(((((((((((.(((((-(((.......)))))...(((((((((......))))).)---------)))))))))).)))))))............((((.....))))..... ( -29.80) >DroSim_CAF1 25970 110 + 1 UUGUAAGAGAUCACUGGCGAUU-GCACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCAC---------AAAUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAA ..............((((..((-(((.......)))))((((((((((((......)))))..---------...........((((((.....)))))).)))))))...))))..... ( -28.50) >DroEre_CAF1 29382 119 + 1 AUGUAAGAGAUCACUGGCGAUU-GCACUACUUAUGCAAGAGUUAAGCAACUAGAUCGUUGGACUAGAUCGUCUAAUAGCACUAGAUUUUUAAUUAAUGUCACUGGCUUAUACCCAAUAAA ..(((.(((.(((.(((((.((-((...((((......))))...))))((((...(((((((......)))))))....))))............))))).)))))).)))........ ( -25.20) >DroYak_CAF1 31492 114 + 1 AUGUAAAAGAUCACUGGCGAUUGGCACUUCUUAUGCAAGAGCUAAGCAACUGGAUCGUUGCACU-----GACUAAUCGCCGUAGGUUUAUAAUUAAGGUCACUGGCUUGCAGCCAAUAU- .......(((((((.(((((((((((.(((((....)))))....(((((......)))))..)-----).))))))))))).)))))..............((((.....))))....- ( -30.80) >consensus UUGUAAGAGAUCACUGGCGAUU_GCACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCAC_________UAAUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAA .....(((((((((((.(((((...........(((((((.((((....)))).)).)))))...........))))))))).)))))))............((((.....))))..... (-21.61 = -22.73 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:31 2006