| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,236,731 – 19,236,839 |
| Length | 108 |
| Max. P | 0.759209 |
| Location | 19,236,731 – 19,236,839 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.59 |
| Mean single sequence MFE | -35.68 |
| Consensus MFE | -24.46 |
| Energy contribution | -24.26 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19236731 108 + 22224390 ACUUAUGGCAAUUCAUCAGUCUGCGGGACGCUCCAGACCUGGCCCCUAAUGGAUUUUGUGGCC--------AUCCACACCUCUGU---AGCUCCGCCGAGG-ACCGACCUUCUCGUCCAA .((.((((....)))).))((.(((((..(((.((((...((..((....))....(((((..--------..))))))))))).---)))))))).))((-((.((.....)))))).. ( -28.80) >DroSec_CAF1 23695 106 + 1 ACUUAGGGCAAUUCAUCAGUCUGCGGGGCGCUCCAGACCUGAC-CCUAAUGGAUUUUAUGGCC--------AUCCACACCUCUGGUGGUGCUCCGCCGAGG-A----CCUCCUCGUCCAA .....((((.............(((((((((((((((..((..-((....))......(((..--------..)))))..))))).)))))))))).((((-.----...)))))))).. ( -42.00) >DroSim_CAF1 20246 106 + 1 ACUUAUGGCAAUUCAUCAGUCUGCGGGGCGCUCCAGACCUGAC-CCUAAUGGAUUUUGUGGCC--------AUCCACACCUCUGGUGGUGCUCCGCCGAGG-A----CCUCCUCGUCCAA .....(((..............(((((((((((((((......-((....))....(((((..--------..)))))..))))).))))))))))(((((-.----...))))).))). ( -41.40) >DroEre_CAF1 21595 103 + 1 ACUUAUGGCAAUUCAUCAGUUUGUGGGGCGUUCCCGACCUGAC-CCUAAUGGAUUUUGUGGGC--------AUCCACACCUCUGG---UGCUUUGCAGAGC-A----GUUCCAUGCCCAA .......((((..((((((..((((((.....(((.((..((.-((....)).))..))))).--------.))))))...))))---))..)))).(.((-(----......))).).. ( -30.70) >DroYak_CAF1 22548 113 + 1 ACUUAUGGCAAUUCAUCAGUUUGUGGAACGUUCCAGACCUGAC-CCUAAUGGAUUUUGUGGCCAUCCGGCCAUCCACACCUCUGGC--UGCUCCGCGGAGAGA----CCUUCUCGCCCAA ......(((..........((((((((.((..(((((..((..-((....)).....((((((....))))))...))..))))).--)).))))))))(((.----....))))))... ( -35.50) >consensus ACUUAUGGCAAUUCAUCAGUCUGCGGGGCGCUCCAGACCUGAC_CCUAAUGGAUUUUGUGGCC________AUCCACACCUCUGG___UGCUCCGCCGAGG_A____CCUCCUCGUCCAA ......(((.............((((((((..(((((.......((....))....(((((............)))))..)))))...)))))))).((((......))))...)))... (-24.46 = -24.26 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:08 2006