Locus 7728

Sequence ID X_DroMel_CAF1
Location 19,236,193 – 19,236,287
Length 94
Max. P 0.984784
window12680

overview

Window 0

Location 19,236,193 – 19,236,287
Length 94
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 77.95
Mean single sequence MFE -24.58
Consensus MFE -15.88
Energy contribution -15.60
Covariance contribution -0.28
Combinations/Pair 1.16
Mean z-score -2.38
Structure conservation index 0.65
SVM decision value 1.99
SVM RNA-class probability 0.984784
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19236193 94 - 22224390
GAGCACAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACCAAAAACACUCGGAUUUCCAUGAGCAGGAAUCUCUAUGUAU--------GUGCAUGCAU
..(((((.((..(((.(((.((((((((((....))))))).))).........((....))....)))...))).....)).)--------))))...... ( -27.40)
>DroSec_CAF1 23151 92 - 1
GAGCACAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACCAAAAACACUCGGAUUUCCAUGAGCAGGANNNNN--NNNNN--------NNNNNNNNNN
.........((((.....((((((((((((....))))))).((..........))....)))))..))))......--.....--------.......... ( -18.50)
>DroSim_CAF1 19719 92 - 1
GAGCACAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACCAAAAACACUCGGAUUUCCAUGAGCGGGAAUCUA--UGUGU--------GUGCAUACAU
..((((..............((((((((((....))))))).)))...((((..((((((((......)))))))).--.))))--------))))...... ( -33.60)
>DroEre_CAF1 21049 99 - 1
GAACAA-AACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACUAAAAACACUUGGAUUUCCAUGAGCAGAAAUCUU--UGUGCAUACAUAUGUACAUACAU
......-......(((((..((.(((((((....)))))))........(((..(((((((........))))))).--.)))))..))))).......... ( -24.50)
>DroYak_CAF1 22121 89 - 1
GAACAAAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACUAAAAACACUCGAAUUUCCAUGAGCAGGGUUCUA--UGUGCAUACA-----------AU
..........(((.((((((((((((((((....))))))).)))................(((((((...)))).)--))))))))))-----------). ( -18.90)
>consensus
GAGCACAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACCAAAAACACUCGGAUUUCCAUGAGCAGGAAUCUA__UGUGC________GU_CAU_CAU
.........((((.....((((((.(((....(((((.(........).))))).))).))))))..))))............................... (-15.88 = -15.60 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:07 2006