| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,234,252 – 19,234,350 |
| Length | 98 |
| Max. P | 0.967442 |
| Location | 19,234,252 – 19,234,350 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.41 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19234252 98 + 22224390 UGUUUACGAGCAAAAGAACA------UGUGUGAUAAUUUGUUAGAUUUCGUUGCUAACAACAGCG---AAGUAAAGCAAAAA--------AAAAGGGUACA-----AAAUGUGAAGCUCA .......((((......(((------(.((((....((((((..(((((((((.......)))))---))))..))))))..--------.......))))-----..))))...)))). ( -21.72) >DroSec_CAF1 21352 98 + 1 UGUUUACGAGCA---GAACA------UGUGUGAUAAUUUGUUAGAUUUCGUUGCUAAUAGCAGCG---AACUAAAGUAAAAAACAAAAAGAAAAGGGUACA-----CA-----AAGCUCA .......((((.---.....------((((((........((((..((((((((.....))))))---)))))).((.....)).............))))-----))-----..)))). ( -21.30) >DroEre_CAF1 19321 104 + 1 UGUUUACGAGCA---GAACGUAUACGUAUGCGAUAAUUUGUUGGCUUUCGUUGCUAAUAGCACCG---AACUAAAAUGCA----------GAAGGGGUGCAAAUGAAAAUGUGGAGCUCA .......((((.---...(((((....)))))......(((((((.......)))))))(((((.---..((........----------..)).)))))...............)))). ( -24.10) >DroYak_CAF1 20292 96 + 1 UGUUUACGAGCA---CAACA------UAUGUGAUAAUUUGUUAGAUUUCGUUGCUAAUGGCAACGAAGAACUAAAAUGAA----------GAAAGGGUAUA-----AAAUGUGGUGCUCA .......(((((---(.(((------(.((((....(((.((((.(((((((((.....)))))))))..))))...)))----------.......))))-----..)))).)))))). ( -26.10) >consensus UGUUUACGAGCA___GAACA______UAUGUGAUAAUUUGUUAGAUUUCGUUGCUAAUAGCAGCG___AACUAAAAUAAA__________AAAAGGGUACA_____AAAUGUGAAGCUCA .......((((................((.((((.....)))).))..((((((.....))))))..................................................)))). (-12.10 = -12.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:06 2006