Locus 7726

Sequence ID	X_DroMel_CAF1
Location	19,233,066 – 19,233,215
Length	149
Max. P	0.900908

overview

Window 7

Location	19,233,066 – 19,233,175
Length	109
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	85.28
Mean single sequence MFE	-26.23
Consensus MFE	-22.46
Energy contribution	-23.47
Covariance contribution	1.00
Combinations/Pair	1.06
Mean z-score	-2.19
Structure conservation index	0.86
SVM decision value	1.02
SVM RNA-class probability	0.900908
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19233066 109 - 22224390
CGCUCGGUUAGCUUUGAAAAACACAUGUGCAACUGUGUUCACUUUUAACACAUUGCGCAUGUGGUUUAUUCGUUCACGCUACGCUUUUUAUCAAUUUGAAAAUUUAACA-----------
.((..(((.(((..((((...(((((((((((.((((((.......))))))))))))))))).))))...)))...)))..))((((((......)))))).......----------- ( -27.80)
>DroSec_CAF1 20055 120 - 1
CGCUCGGUUAGCUUUGAAAAACACAUGUGCAACUGUGUUCACUUUUAACACACUCCGCAUGUGGUUUAUUCGUUCACACUACGCUUUUUAUCAAUUUGAAAAUUUAACCCGUUUUUCAAA
.(((.....))).((((((((((((((((....((((((.......))))))...)))))))((((....(((.......))).((((((......))))))...)))).))))))))). ( -25.90)
>DroYak_CAF1 18942 120 - 1
CGCUCGGUUAGCUUUGAAAAACACAUGUGCAGCUGUGUUUACUCUUAACACAUUGCGCCUGUGGUUUAUUCUUUUACGCUCAGCUUUUUGUCAAUUUGAAAAUGUAACCUGUUCCUCAAA
.....((((((((........((((.((((((.((((((.......)))))))))))).))))((.((......)).))..)))((((((......))))))..)))))........... ( -25.00)
>consensus
CGCUCGGUUAGCUUUGAAAAACACAUGUGCAACUGUGUUCACUUUUAACACAUUGCGCAUGUGGUUUAUUCGUUCACGCUACGCUUUUUAUCAAUUUGAAAAUUUAACC_GUU__UCAAA
.....(((((....((((...(((((((((((.((((((.......))))))))))))))))).))))................((((((......))))))..)))))........... (-22.46 = -23.47 +   1.00)

alignment

secondary structure

dotplot

Window 8

Location	19,233,095 – 19,233,215
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	92.78
Mean single sequence MFE	-30.17
Consensus MFE	-27.43
Energy contribution	-28.43
Covariance contribution	1.00
Combinations/Pair	1.06
Mean z-score	-1.73
Structure conservation index	0.91
SVM decision value	0.20
SVM RNA-class probability	0.629444
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19233095 120 - 22224390
AGAGAACCAAUUUGACUGGCAUUUAAAAAAAAAUGGGCUUCGCUCGGUUAGCUUUGAAAAACACAUGUGCAACUGUGUUCACUUUUAACACAUUGCGCAUGUGGUUUAUUCGUUCACGCU
...(((((((.(((((((.(((((......)))))(((...))))))))))..))).....(((((((((((.((((((.......)))))))))))))))))........))))..... ( -34.90)
>DroSec_CAF1 20095 120 - 1
AGAGAACCAAUUUGACUGGCAUUUAAAAAAUAAUGGGCUUCGCUCGGUUAGCUUUGAAAAACACAUGUGCAACUGUGUUCACUUUUAACACACUCCGCAUGUGGUUUAUUCGUUCACACU
...(((((((.(((((((.((((........))))(((...))))))))))..))).....((((((((....((((((.......))))))...))))))))........))))..... ( -27.00)
>DroYak_CAF1 18982 120 - 1
AGGGAACCAAUUUGACUGGCAUUUAAAAAAUAAUCGGUUUCGCUCGGUUAGCUUUGAAAAACACAUGUGCAGCUGUGUUUACUCUUAACACAUUGCGCCUGUGGUUUAUUCUUUUACGCU
.................(((.((((((...(((((((......)))))))..))))))...((((.((((((.((((((.......)))))))))))).))))..............))) ( -28.60)
>consensus
AGAGAACCAAUUUGACUGGCAUUUAAAAAAUAAUGGGCUUCGCUCGGUUAGCUUUGAAAAACACAUGUGCAACUGUGUUCACUUUUAACACAUUGCGCAUGUGGUUUAUUCGUUCACGCU
...(((((((.(((((((((.....................)).)))))))..))).....(((((((((((.((((((.......)))))))))))))))))........))))..... (-27.43 = -28.43 +   1.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:06 2006