Locus 7722

Sequence ID X_DroMel_CAF1
Location 19,226,087 – 19,226,192
Length 105
Max. P 0.637004
window12663

overview

Window 3

Location 19,226,087 – 19,226,192
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.66
Mean single sequence MFE -25.59
Consensus MFE -4.17
Energy contribution -3.89
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.57
Structure conservation index 0.16
SVM decision value 0.21
SVM RNA-class probability 0.637004
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19226087 105 + 22224390
CGCUU-G--CUAACCCCAAGGACGGUG------------AAGAUGAUUCGUCUUCUUUUGCGCCCGAAUUUUCAUUCACGAAUUUUAUUAAACAUUUUAGCCAAGCGAAUAAUUCCAUGC
(((((-(--((((((....))...(((------------((((.((((((..(.(....).)..)))))).)).))))).................)))).))))))............. ( -22.90)
>DroSec_CAF1 13221 102 + 1
AGCUU-GGCCCCAUCCUUGGCAUGGUG------------AAGAUGAUUCGUCUUCUUUCGC-CCCGAAUUUU----CACGAAUUUUAUUAAACAUUUCGGCCAAGCAAAUAAUUCCAUGC
.((((-(((((((....))).(((...------------((...(((((((.....((((.-..))))....----.)))))))...))...)))...)))))))).............. ( -27.50)
>DroSim_CAF1 12999 102 + 1
AGCUU-GGCCCCAUCCUUGGCAUGGUG------------AAGAUGAUUCGUCUUCUUUCGC-CCCGAGUUUU----CACGAAUUUUAUUAAACAUUUCGGCCAAGCAAAUAAUUCCAUGC
.((((-((((.....(((((...((((------------((((.((....)).)).)))))-))))))....----...(((.............))))))))))).............. ( -29.82)
>DroEre_CAF1 11575 103 + 1
GGUUU---GGC-----CAAGGGUGGAGAGGAGCUGCUUUG-GAUGAUUCGUCUUCUUUCGC-CCC---UUUU----CACGAAUUUUAUUAAACAUUUCUGCCAAGCAAAUAAUUUCAUGC
.((((---(((-----.....(((((((((.((......(-((((...)))))......))-.))---))))----)))(((.............))).))))))).............. ( -27.92)
>DroYak_CAF1 12180 101 + 1
GACUUUGGGGC-----CAAGGGUGGUG------UGCUUUGGGAUGAUUCGUCUUCUUUUGC-CCC---UUUU----CACGAAUUUUAUUAAACAUUUCGGCCGAGCAAAUAAUCUCAUGC
........(((-----((((((.((((------......((((((...))))))....)))-)))---))).----...(((.............)))))))(((........))).... ( -19.82)
>consensus
AGCUU_GGCCC_A_CCCAAGGAUGGUG____________AAGAUGAUUCGUCUUCUUUCGC_CCCGA_UUUU____CACGAAUUUUAUUAAACAUUUCGGCCAAGCAAAUAAUUCCAUGC
.....................((((...................(((((((..........................)))))))...............((...))........)))).. ( -4.17 =  -3.89 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:53 2006