| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,225,934 – 19,226,050 |
| Length | 116 |
| Max. P | 0.540929 |
| Location | 19,225,934 – 19,226,050 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.02 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -8.66 |
| Energy contribution | -10.74 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19225934 116 + 22224390 -UCCUUGCCUUGCACUUUGGCAAAUUUGGAA---AAAUGAUUUUAAAAUCCAUUAGGCAGGCAGGCGGGCAGGCAACAACGCUUGCCAAUCUGCCAUCGAACUUCCAUUCAUUGAGCUAU -...(((((.........)))))...(((((---...((((........((....))..((((((..(((((((......)))))))..))))))))))...)))))............. ( -35.70) >DroSec_CAF1 13073 110 + 1 -CCAUUGCCUUGCACUUUGGCAAAUUUGAAG---AAAUGAUUUUAAAAUCCAUUAGGCAGGCAAGCA-----GCAACAACGCUUGCCAAUCUGCCAUCGAACU-CCAUUCAUUGAGCUAU -...(((((.........))))).(((((..---....((((....)))).....(((((((((((.-----........)))))))....)))).)))))((-(........))).... ( -25.60) >DroSim_CAF1 12851 110 + 1 -CCAUUGCCUUGCACUUUGGCAAAUUUGGCA---AAAUGAUUUUAAAAUCCAUUAGGCAGGCAAGCA-----GCAACAACGCUUGCCAAUCUGCCAUCGAACU-CCAUUCAUGGAGCUAU -...(((((((((......))))....))))---)....................(((((((((((.-----........)))))))....))))......((-(((....))))).... ( -31.00) >DroEre_CAF1 11437 101 + 1 GACCUCGCCUUGCACUGUGACAAAUUUCGAAAAAAAAUGAUUUUUAAAUCGAUUAGA-------ACA-----GCAA--GAACAGUUUUGUCUGCCGUCAAACU-CUA----UUGAGGUAU .(((((((...))....((((.....((((...((((....))))...)))).....-------.((-----((((--((....))))).)))..))))....-...----..))))).. ( -18.60) >DroYak_CAF1 12040 101 + 1 GUUAUGGCCUUGCACUUUGGCAAAUUUGGAA---AAAUGAUUUUAAAAUCCAUUAGGCGA----ACA-----ACGA--ACGCUUUGUUGCCAGCCAUCGAACU-CCA----UUGAGUUAU ...(((((.((((......))))...((((.---..............))))...(((.(----(((-----(...--.....)))))))).)))))..((((-(..----..))))).. ( -20.96) >consensus _CCAUUGCCUUGCACUUUGGCAAAUUUGGAA___AAAUGAUUUUAAAAUCCAUUAGGCAGGCA_GCA_____GCAACAACGCUUGCCAAUCUGCCAUCGAACU_CCAUUCAUUGAGCUAU .................((((.....((((....(((....)))....))))..(((..(((((((..............)))))))..)))))))........................ ( -8.66 = -10.74 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:52 2006