Locus 7720

Sequence ID X_DroMel_CAF1
Location 19,224,674 – 19,224,780
Length 106
Max. P 0.565736
window12661

overview

Window 1

Location 19,224,674 – 19,224,780
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.57
Mean single sequence MFE -23.06
Consensus MFE -6.24
Energy contribution -8.28
Covariance contribution 2.04
Combinations/Pair 1.05
Mean z-score -1.73
Structure conservation index 0.27
SVM decision value 0.06
SVM RNA-class probability 0.565736
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19224674 106 - 22224390
-------------UGAUUCUUCAGUGAUUCACAAUCGCGUCAGCACUUCAAUUCAUUUCAUUUUGGGUCACUGUAACACAAAACGAGUCCAACUGAAUCAGCGCACA-GGUAAUCCAAUA
-------------((((((..((((((((((.(((.((....)).....((.....)).))).))))))))))............((.....)))))))).......-((....)).... ( -16.90)
>DroSec_CAF1 11693 107 - 1
GCGUGCA----ACUGAUUCUUCAGUGAUUCACAAUCGAGUCAGCA-----AUUCAUUUCAU-UUGGGUCAAAGUAACUCAAAACGAGUCCAACUGAAUCAG--CACA-GGUAAUCCAAUA
..((((.----(((((....)))))(((((......)))))....-----......((((.-((((.........((((.....)))))))).))))...)--))).-((....)).... ( -24.70)
>DroSim_CAF1 11676 97 - 1
GCGUGCA----ACUGAUUCUUC----------AAUCGAGUCAGCA-----AUUCAUUUCAU-UUGGGUCAAAGUAACUCAAAACGAGUCCAACUGAAUCAG--CACA-GGUAAUCCAAUA
..((((.----.(((((((...----------....)))))))..-----......((((.-((((.........((((.....)))))))).))))...)--))).-((....)).... ( -23.10)
>DroEre_CAF1 10288 100 - 1
ACAUAAA----ACUGAUU---CAGUGAUUCACAUUCGAGUCAGCA-----CU-----UCAU-UUGGGUCACUGUAACACAGAACGAAUCCAACUGAAUCAG--CACGGGGUAAUCCAAUA
.......----.((((((---(((((((((......((.((((..-----..-----....-)))).)).(((.....)))...)))))..))))))))))--...(((....))).... ( -27.00)
>DroYak_CAF1 10824 103 - 1
ACAUACGAUUUACUGAUU---CAGCGAUUCACAUUCGAGUCAGCA-----CU-----UCAU-UUGGGGCAGUGUAACACAAAACGAGUUCCACUGAAUCAG--CACA-GGUAAUGCAAUA
...(((......((((((---(((.(((((......)))))....-----..-----....-.((((((.((..........))..)))))))))))))))--....-.)))........ ( -23.60)
>consensus
ACAUACA____ACUGAUUCUUCAGUGAUUCACAAUCGAGUCAGCA_____AUUCAUUUCAU_UUGGGUCAAUGUAACACAAAACGAGUCCAACUGAAUCAG__CACA_GGUAAUCCAAUA
............(((((((......(((((......))))).....................(((((((...............)).)))))..)))))))................... ( -6.24 =  -8.28 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:51 2006