Locus 7719

Sequence ID X_DroMel_CAF1
Location 19,223,599 – 19,223,690
Length 91
Max. P 0.589634
window12660

overview

Window 0

Location 19,223,599 – 19,223,690
Length 91
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 73.06
Mean single sequence MFE -21.17
Consensus MFE -12.22
Energy contribution -13.31
Covariance contribution 1.09
Combinations/Pair 1.19
Mean z-score -1.38
Structure conservation index 0.58
SVM decision value 0.11
SVM RNA-class probability 0.589634
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19223599 91 + 22224390
AGGCAACCAAC-------------------GAGGCAAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGG-ACAUAAUUGUUU-UUUGCUUCAUUCUGGGAGAUUG
......(((..-------------------(((((((.(((((.....(..(((((..((((....))))))))).-.)....))))).-.)))))))....)))....... ( -22.40)
>DroVir_CAF1 17175 81 + 1
-------------------------ACACACUCUCACUCACACACA-CGAAGAUCAAAAUUGACAGCAAUUUGCAGUUCUUAAUUGUUG-UU-AUUGCA---UGGCAAGUGA
-------------------------............((((.....-.............(((((((((((..........))))))))-))-)((((.---..)))))))) ( -14.20)
>DroSec_CAF1 10587 91 + 1
AGGCAACCAAU-------------------GAGGCAAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGG-ACAUAAUUGUUU-UUUGCUUCAUUCUGGGAGAUUG
......(((((-------------------(((((((.(((((.....(..(((((..((((....))))))))).-.)....))))).-.)))))))))..)))....... ( -25.50)
>DroSim_CAF1 10619 91 + 1
AGGCAACCAAC-------------------GAGGCAAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGG-ACAUAAUUGUUU-UUUGCUUCAUUCUGGGAGAUUG
......(((..-------------------(((((((.(((((.....(..(((((..((((....))))))))).-.)....))))).-.)))))))....)))....... ( -22.40)
>DroEre_CAF1 9220 85 + 1
-------------------------AACCAGGGGCAAUAACAAACAGCGGACGCAAGAAUUGACACCAAUUUGCGG-ACAUAAUUGUUU-AUUGUUUCUUUCUGGGAGAUUG
-------------------------..((((..(.(((((.((((((.(..(((((..((((....))))))))).-.)....))))))-.)))))..)..))))....... ( -22.20)
>DroYak_CAF1 9735 110 + 1
-GACAACCAACAACCAACAGCCGACAACCAGGGGCAAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGG-ACAUAAUUGUUUUUUUGUUUCUUUCUGGGAGAUUG
-.......................(..((((..(.(((((.((((((.(..(((((..((((....))))))))).-.)....))))))..)))))..)..))))..).... ( -20.30)
>consensus
_GGCAACCAAC___________________GAGGCAAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGG_ACAUAAUUGUUU_UUUGCUUCAUUCUGGGAGAUUG
..............................(((((((.(((((........((((..(((((....)))))))))........)))))...))))))).............. (-12.22 = -13.31 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:50 2006