| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,223,470 – 19,223,563 |
| Length | 93 |
| Max. P | 0.962855 |
| Location | 19,223,470 – 19,223,563 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -9.98 |
| Consensus MFE | -9.97 |
| Energy contribution | -9.97 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.42 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.962855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19223470 93 - 22224390 CCAUCACCAUCAUCAACAUCACGUUCCCAACUAA----CCACCCACCACUUCCUUUAACGAUGAUGGAAUCGCCGUCCGUCAUGCAAAGUGUAGCUC ...............((((..((((.........----..................))))((((((((.......)))))))).....))))..... ( -10.13) >DroEre_CAF1 9112 76 - 1 ---------------CCAUCACGUUCCCAACUAA----CCGCCCACCACUUCCUUUAACGAUGAUGGAAUCGCCGUCCGUCAUGCAAAGUGC--CUC ---------------...................----........(((((......(((..(((((.....))))))))......))))).--... ( -9.90) >DroYak_CAF1 9619 80 - 1 ---------------CCAUCACGUUCCCAACUAACCAACCACCCACCACUUCCUUUAACGAUGAUGGAAUCGCCGUCCGUCAUGCAAAGUGC--CUC ---------------...............................(((((......(((..(((((.....))))))))......))))).--... ( -9.90) >consensus _______________CCAUCACGUUCCCAACUAA____CCACCCACCACUUCCUUUAACGAUGAUGGAAUCGCCGUCCGUCAUGCAAAGUGC__CUC ..............................................(((((......(((..(((((.....))))))))......)))))...... ( -9.97 = -9.97 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:49 2006