Locus 7716

Sequence ID X_DroMel_CAF1
Location 19,221,055 – 19,221,146
Length 91
Max. P 0.943667
window12655

overview

Window 5

Location 19,221,055 – 19,221,146
Length 91
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 80.09
Mean single sequence MFE -34.35
Consensus MFE -21.12
Energy contribution -25.12
Covariance contribution 4.00
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.61
SVM decision value 1.34
SVM RNA-class probability 0.943667
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19221055 91 + 22224390
------CUGCUGCGUACAC-----------------ACAUAUGCCGGCAACUAGAAUUAAGAAUCGAGACGAGAGUGCCAUUAGCCGCUGCUGUCGAGCUGUGGCACUCUCUCC
------.(((((((((...-----------------...)))).)))))..................((.(((((((((((.((((((....).)).)))))))))))))))). ( -33.60)
>DroSec_CAF1 7991 95 + 1
ACUCGACUGCUGCGUACAC-------------------AUAUGCCGGCAACUAGAAUUAAGAAUCGAGACGAGAAUGCCAUUAGCCGGUGCUGUCGAGCUGUGGCACUCUCUCC
.(((((.(((((((((...-------------------.)))).))))).((.......))..)))))..((((.((((((.((((((.....))).))))))))).))))... ( -32.40)
>DroSim_CAF1 8040 99 + 1
ACUCGACUGCUGCGUACACAU---------------ACAUAUGCCGGCAACUAGAAUUAAGAAUCGAGACGAGAGUGCCAUUAGCCGGUGCUGUCGAGCUGUGGCACUCUCUCC
.(((((.(((((((((.....---------------...)))).))))).((.......))..)))))..(((((((((((.((((((.....))).))))))))))))))... ( -38.40)
>DroYak_CAF1 7104 106 + 1
ACUCGAGUGCUGCGUAC----UACACACACAUGUACACACAUGUCGGGAACUAGAAUUAAGAAUCGAGACGAGUGCGCCAUUAGCCGGCGCUGUCGAGCAG--CCA--CUCUCC
....(((((((((...(----((....(((((((....)))))).).....)))...............(((..(((((.......)))))..))).))))--.))--)))... ( -33.00)
>consensus
ACUCGACUGCUGCGUACAC_________________ACAUAUGCCGGCAACUAGAAUUAAGAAUCGAGACGAGAGUGCCAUUAGCCGGUGCUGUCGAGCUGUGGCACUCUCUCC
.(((((.(((((((((.......................)))).))))).((.......))..)))))..(((((((((((.((((((.....))).))))))))))))))... (-21.12 = -25.12 +   4.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:46 2006