| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,213,765 – 19,213,872 |
| Length | 107 |
| Max. P | 0.525171 |
| Location | 19,213,765 – 19,213,872 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.82 |
| Mean single sequence MFE | -34.40 |
| Consensus MFE | -33.17 |
| Energy contribution | -32.73 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.96 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19213765 107 + 22224390 -AGA------ACGAGGG------AUUCGGUGGAGGUAAAUCCGUUGCCCAAUGGCAACUCUUGUGAAGGAGAUUAAGAUGACGAACUGCAGGUCACGCGAGUGGAGCAACUUUGUCGUUG -...------((((((.------.......(((......)))((((((....))))))))))))............(((((((((.(((...((((....)))).)))..))))))))). ( -33.70) >DroEre_CAF1 32070 113 + 1 -AGAACGGAGACGAGGG------ACUCGGUGGAGGUAAAUCUGUUGCCCAAUGGCAGCUCUUGUGGAGGGGAUUAAGAUGACGAACUGCAGGUCACGCGAGUGGAGCAACUUUGUCGUUG -....((....))....------.(((.(..((((....)))((((((....))))))..)..).)))........(((((((((.(((...((((....)))).)))..))))))))). ( -33.80) >DroYak_CAF1 33003 120 + 1 GAGGAGGUGGACGAGGGAGGUGGAUUCGGUGGAGGUAAAUCCGUUGCCCGAUGGCAACUCUUGUGGAGGAGAUUAAGAUGACGAACUGCAGGUCACGCGAGUGGAGCAACUUUGUCGUUG .........(((((.(((((..(.((((..(((......)))((((((....))))))(((((..........)))))...)))))..)...((((....)))).....)))).))))). ( -35.70) >consensus _AGAA_G__GACGAGGG______AUUCGGUGGAGGUAAAUCCGUUGCCCAAUGGCAACUCUUGUGGAGGAGAUUAAGAUGACGAACUGCAGGUCACGCGAGUGGAGCAACUUUGUCGUUG ..........((((((..............(((......)))((((((....))))))))))))............(((((((((.(((...((((....)))).)))..))))))))). (-33.17 = -32.73 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:43 2006